Jatropha Genome Database

JcCB0399861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0399861.10 - phase: 1 /partial
         (113 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g34050.2                                                       129   1e-30
Glyma08g34050.1                                                       128   1e-30

>Glyma08g34050.2 
          Length = 404

 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 76/103 (73%), Gaps = 4/103 (3%)

Query: 14  RHSSTTGIYC---NYDETARKSNQSSSSGIQLYGQIERLLTETVRQSQDAWGGSKDWIEV 70
           R  +TT I C   NY++   +  +  S  IQ+Y QIERLLT++VRQSQD W GS DW EV
Sbjct: 35  RFGTTTRICCTSNNYNDNNIQ-RRPQSEAIQVYSQIERLLTDSVRQSQDGWWGSPDWSEV 93

Query: 71  EGAWVLKPRISRPKSVVHFVGGIFVGAAPQLTYRLFLERLVEK 113
           EGAW+LKP+ S P  VVHF+GGIFVGAAPQLTYR FLERL EK
Sbjct: 94  EGAWILKPKSSEPNYVVHFIGGIFVGAAPQLTYRRFLERLSEK 136


>Glyma08g34050.1 
          Length = 432

 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 76/103 (73%), Gaps = 4/103 (3%)

Query: 14  RHSSTTGIYC---NYDETARKSNQSSSSGIQLYGQIERLLTETVRQSQDAWGGSKDWIEV 70
           R  +TT I C   NY++   +  +  S  IQ+Y QIERLLT++VRQSQD W GS DW EV
Sbjct: 35  RFGTTTRICCTSNNYNDNNIQ-RRPQSEAIQVYSQIERLLTDSVRQSQDGWWGSPDWSEV 93

Query: 71  EGAWVLKPRISRPKSVVHFVGGIFVGAAPQLTYRLFLERLVEK 113
           EGAW+LKP+ S P  VVHF+GGIFVGAAPQLTYR FLERL EK
Sbjct: 94  EGAWILKPKSSEPNYVVHFIGGIFVGAAPQLTYRRFLERLSEK 136