Jatropha Genome Database

JcCB0398871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0398871.10 + phase: 2 /partial
         (53 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g03490.1                                                        84   3e-17
Glyma19g02030.1                                                        84   4e-17
Glyma04g03490.2                                                        82   1e-16

>Glyma04g03490.1 
          Length = 568

 Score = 84.0 bits (206), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/44 (79%), Positives = 41/44 (93%)

Query: 10  AVCSAVGVLPLSLQYGFSIVEKFLKGASSIDQHFSSAPFEKNVP 53
           +VCSAVG+LPLSLQYGFS++EKFL+GASSIDQHF S PFE N+P
Sbjct: 276 SVCSAVGILPLSLQYGFSVIEKFLRGASSIDQHFYSQPFESNIP 319


>Glyma19g02030.1 
          Length = 911

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/44 (81%), Positives = 41/44 (93%)

Query: 10  AVCSAVGVLPLSLQYGFSIVEKFLKGASSIDQHFSSAPFEKNVP 53
           +VCSAVGVLPLSLQYGFS++EKFLKGASSIDQH  S PFE+N+P
Sbjct: 302 SVCSAVGVLPLSLQYGFSVIEKFLKGASSIDQHMYSEPFERNLP 345


>Glyma04g03490.2 
          Length = 487

 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 41/44 (93%)

Query: 10  AVCSAVGVLPLSLQYGFSIVEKFLKGASSIDQHFSSAPFEKNVP 53
           +VCSAVG+LPLSLQYGFS++EKFL+GASSIDQHF S PFE N+P
Sbjct: 276 SVCSAVGILPLSLQYGFSVIEKFLRGASSIDQHFYSQPFESNIP 319