Jatropha Genome Database

JcCB0398861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0398861.10 + phase: 1 /partial
         (185 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g03490.1                                                       316   8e-87
Glyma19g02030.1                                                       193   9e-50
Glyma06g03560.1                                                       179   2e-45
Glyma04g03490.2                                                       176   1e-44
Glyma14g17220.1                                                        70   2e-12

>Glyma04g03490.1 
          Length = 568

 Score =  316 bits (810), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 155/185 (83%), Positives = 174/185 (94%)

Query: 1   EPGTNGQHSFYQLIHQGRIIPCDFIGVVKSQQPVYLEGEVVNNHDELMSNFFAQPDALAY 60
           EPGTNGQHSFYQLIHQGR+IPCDFIGVVKSQQPV+L+GEVV+NHDELMSN+FAQ DALAY
Sbjct: 384 EPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVFLKGEVVSNHDELMSNYFAQSDALAY 443

Query: 61  GKTAEQLQKENVPQNLIPHKTFSGNRPSLSILLSALDAYKIGQLLAIYEHRVVVQGFIWG 120
           GKTAEQLQKENV  +LIPHKTFSGNRPSLS+LL +L+AY IGQLLAIYEHR+ V+GFIWG
Sbjct: 444 GKTAEQLQKENVSPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWG 503

Query: 121 INSFDQWGVELGKSLATQVRKQLHASRTKGEPVEGFNFSTTSLLKRYLEESSDVPKNPQT 180
           INSFDQWGVELGKSLATQVRKQL+ASRTKGEPV+GFNFSTT++L RYL+ SSDVP +  T
Sbjct: 504 INSFDQWGVELGKSLATQVRKQLNASRTKGEPVQGFNFSTTTMLTRYLQASSDVPADLPT 563

Query: 181 LLPRI 185
           +LP+I
Sbjct: 564 VLPKI 568


>Glyma19g02030.1 
          Length = 911

 Score =  193 bits (490), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 100/129 (77%), Positives = 115/129 (89%)

Query: 57  ALAYGKTAEQLQKENVPQNLIPHKTFSGNRPSLSILLSALDAYKIGQLLAIYEHRVVVQG 116
           A  Y  TAEQLQKENVP +L+PHKTFSGNRPSLS+LL +L+AY IGQLLAIYEHRV V+G
Sbjct: 783 AYKYFMTAEQLQKENVPPHLVPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRVAVEG 842

Query: 117 FIWGINSFDQWGVELGKSLATQVRKQLHASRTKGEPVEGFNFSTTSLLKRYLEESSDVPK 176
           FIWGINSFDQWGVELGKSLA+QVRKQL+ASRTKGEPV+GFNFSTT++L RYL+ S+DVP 
Sbjct: 843 FIWGINSFDQWGVELGKSLASQVRKQLNASRTKGEPVQGFNFSTTAMLTRYLQASADVPA 902

Query: 177 NPQTLLPRI 185
           +  T LP+I
Sbjct: 903 DLPTRLPQI 911



 Score =  134 bits (336), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 63/70 (90%)

Query: 1   EPGTNGQHSFYQLIHQGRIIPCDFIGVVKSQQPVYLEGEVVNNHDELMSNFFAQPDALAY 60
           EPGTNGQHSFYQLIHQGR+IPCDFIGVVKSQQPVYL GEVV+NHDELMSNFFAQPDALAY
Sbjct: 410 EPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLSGEVVSNHDELMSNFFAQPDALAY 469

Query: 61  GKTAEQLQKE 70
           GK      KE
Sbjct: 470 GKVRTSWIKE 479


>Glyma06g03560.1 
          Length = 492

 Score =  179 bits (453), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/116 (80%), Positives = 105/116 (90%), Gaps = 2/116 (1%)

Query: 1   EPGTNGQHSFYQLIHQGRIIPCDFIGVVKSQQPVYLEGEVVNNHDELMSNFFAQPDALAY 60
           EPGTNGQHSFYQLIHQGR+IPCDFIGVVKSQQPV+L+GEVV+NHDELMSN+FAQ DALAY
Sbjct: 358 EPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVFLKGEVVSNHDELMSNYFAQSDALAY 417

Query: 61  GKTAEQLQKENVPQNLIPHKTFSGNRPSLSILLSALDAYKIGQLLAIYEHRVVVQG 116
           GKTAEQLQKENV  +LIPHKTFSGNRPSLS+LL +L+AY IGQ L   E++V + G
Sbjct: 418 GKTAEQLQKENVSPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQFL--MEYKVSICG 471


>Glyma04g03490.2 
          Length = 487

 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/104 (85%), Positives = 99/104 (95%)

Query: 1   EPGTNGQHSFYQLIHQGRIIPCDFIGVVKSQQPVYLEGEVVNNHDELMSNFFAQPDALAY 60
           EPGTNGQHSFYQLIHQGR+IPCDFIGVVKSQQPV+L+GEVV+NHDELMSN+FAQ DALAY
Sbjct: 384 EPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVFLKGEVVSNHDELMSNYFAQSDALAY 443

Query: 61  GKTAEQLQKENVPQNLIPHKTFSGNRPSLSILLSALDAYKIGQL 104
           GKTAEQLQKENV  +LIPHKTFSGNRPSLS+LL +L+AY IGQ+
Sbjct: 444 GKTAEQLQKENVSPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQV 487


>Glyma14g17220.1 
          Length = 42

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 37/42 (88%)

Query: 12 QLIHQGRIIPCDFIGVVKSQQPVYLEGEVVNNHDELMSNFFA 53
          + I   R+IPCDFIGVVK+QQPV+L+GEVV+NHD+LMS +FA
Sbjct: 1  KFISSQRVIPCDFIGVVKNQQPVFLKGEVVSNHDDLMSKYFA 42