Jatropha Genome Database

JcCB0398461.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0398461.20 + phase: 0 /partial
         (76 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g13220.1                                                        49   2e-06
Glyma13g28210.1                                                        49   2e-06
Glyma15g10840.1                                                        48   2e-06
Glyma08g10360.1                                                        48   3e-06
Glyma17g02100.1                                                        47   5e-06

>Glyma06g13220.1 
          Length = 376

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 27/44 (61%)

Query: 29 LPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSR 72
          LP E+ + IL RLP+ SL+  K VC SW  L  DP  AT HF +
Sbjct: 18 LPWELIIEILLRLPVKSLVRFKCVCKSWLCLLSDPHFATSHFEQ 61


>Glyma13g28210.1 
          Length = 406

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 22 EATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHF 70
          E+  +  LP E+ + ILSRLP+ SL+  + VC SW SL  DP     H 
Sbjct: 42 ESLPLPFLPDELVVEILSRLPVKSLLQFRCVCKSWMSLISDPYFMKKHL 90


>Glyma15g10840.1 
          Length = 405

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 22 EATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHF 70
          E+  +  LP E+ + ILSRLP+ SL+  + VC SW SL  DP     H 
Sbjct: 42 ESLPLPFLPDELVVEILSRLPVKSLLQFRCVCKSWMSLIYDPYFMKKHL 90


>Glyma08g10360.1 
          Length = 363

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 26/42 (61%)

Query: 29 LPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHF 70
          LP+++   IL RLP+ SL+  KSVC SW  L  DP  A  HF
Sbjct: 3  LPQDLITEILLRLPVKSLVRFKSVCKSWLFLISDPRFAKSHF 44


>Glyma17g02100.1 
          Length = 394

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 27/51 (52%)

Query: 20 HQEATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHF 70
            E   M  LP+E+   IL RLP+ SLI  K+VC SW S   DP     HF
Sbjct: 23 QNENEKMVDLPQELIHEILLRLPVKSLIRFKTVCKSWLSHISDPHFTASHF 73