Jatropha Genome Database

JcCB0395701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0395701.10 + phase: 0 /pseudo/partial
         (85 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g11180.1                                                        87   3e-18

>Glyma02g11180.1 
          Length = 481

 Score = 87.4 bits (215), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/93 (53%), Positives = 62/93 (66%), Gaps = 13/93 (13%)

Query: 1  MLSKIIKNVNAGADMGFLRQLR----------RYISVSSKT---VMDIAGKDGELRVFVV 47
          MLSK I  ++ GA     R+            ++ SVSS     ++++A +DGELRVF+V
Sbjct: 1  MLSKWIPPISLGAKSLLRRKCNLNPNPNIPRVQWFSVSSSKAAPMIEMAARDGELRVFLV 60

Query: 48 AGEVSGDTIGSRLMASLKKLSPTPIRFAGVGGV 80
          AGEVSGD+I SRLMASLK LSP PIRFAGVGGV
Sbjct: 61 AGEVSGDSIASRLMASLKILSPLPIRFAGVGGV 93