Jatropha Genome Database

JcCB0394911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0394911.10 - phase: 0 /partial
         (473 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g04690.1                                                       385   e-107
Glyma16g01270.1                                                       377   e-104
Glyma14g38480.1                                                       109   7e-24
Glyma16g01260.1                                                        53   6e-07

>Glyma07g04690.1 
          Length = 1132

 Score =  385 bits (990), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/397 (53%), Positives = 267/397 (67%), Gaps = 16/397 (4%)

Query: 58  MSLENVVKDIPLISDNSWTYGDLMEVESRILKALQPRLFLDPTPKLDRLCNNPTATXXXX 117
           MSLEN+VKDIP I+D SWTYGDLMEVES+ILKALQP+L LDPTPKLDRLC +P  T    
Sbjct: 1   MSLENIVKDIPSITDKSWTYGDLMEVESKILKALQPKLHLDPTPKLDRLCESPLPTKLNL 60

Query: 118 XXXXXXXXXXXQMPEVTVTSSSRIHGKKVCIDRVLESSNSRLGDSGMISGNMMPQSVQEN 177
                       MPE  VTS+++IHGKKVCIDRV ESS +RLGD G  + N + Q   EN
Sbjct: 61  PRKRLK-----NMPEFAVTSTNKIHGKKVCIDRVQESSINRLGDVGNTASNAIVQQTHEN 115

Query: 178 LTTQNLVPNM-LPLRARSFVSDGNVSALPLVSQQSRYQLGLGTPRSMQDQGSGSLVNIPG 236
              QNL PN+ + LR+++F+ D ++   P++S QSRY + +GT RS+Q+QG    +N  G
Sbjct: 116 PAMQNLSPNVAMALRSKNFIPDSSIPNFPMMSHQSRYSMAVGTQRSLQEQGPTPSINSLG 175

Query: 237 ASPAGQDMMITYGDHINSGASLHGKRENQDGQMSPLSSFNKRARVTSVGPDGMQQQQLGP 296
           ASPA QD+MI+Y ++ NSGASL GKR+NQDGQ SPLS+  KR R  S   D MQ QQ+G 
Sbjct: 176 ASPATQDVMISYAENANSGASLLGKRDNQDGQASPLSNIAKRMRPASTVLDAMQHQQIGS 235

Query: 297 HIDGLHASDMNWKNSLLPHQATARGIHYANTGIQKYPQQVFEGVMNQNAMPTSF-SAPQQ 355
           H++ L  SDMNW+N+L   QA AR I YA+ GIQK+PQQ FEG  NQ      F S+ QQ
Sbjct: 236 HVEALQGSDMNWQNTLQ-QQAMAR-IQYASGGIQKFPQQAFEGGANQETGAIPFASSQQQ 293

Query: 356 GVRFGPKEEQFETEKLDVSELNQGKNDMMDTEMGHXX-XXXXXXXXXXXXXXMRSNFSQT 414
           G+R   KEEQFE EKLD +E+N+ K++ M+ EM +                 MRSNF Q 
Sbjct: 294 GMRLVAKEEQFEMEKLDGAEINRNKSE-MEMEMNNLDPQQLRIQQRLSQHAFMRSNFPQA 352

Query: 415 AWNNLSQ----DSRKEEQIQGKRKTVQSPRLSAGTFP 447
           AWN+L Q    +++KE+Q+Q KRK+VQSPRLS G  P
Sbjct: 353 AWNSLGQPMEKETKKEDQLQ-KRKSVQSPRLSTGALP 388


>Glyma16g01270.1 
          Length = 1162

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/397 (52%), Positives = 260/397 (65%), Gaps = 19/397 (4%)

Query: 58  MSLENVVKDIPLISDNSWTYGDLMEVESRILKALQPRLFLDPTPKLDRLCNNPTATXXXX 117
           MSLEN+VKDIP I+D SWTYGDLMEVES+ILKALQP+L LDPTPKLDRLC +P  T    
Sbjct: 1   MSLENIVKDIPSITDKSWTYGDLMEVESKILKALQPKLHLDPTPKLDRLCESPLPT---- 56

Query: 118 XXXXXXXXXXXQMPEVTVTSSSRIHGKKVCIDRVLESSNSRLGDSGMISGNMMPQSVQEN 177
                       MPE  VTS+++IHGKKVCIDRV ESS SR+GD G  + N + Q   EN
Sbjct: 57  -KLNLPRKRLKNMPEFAVTSTNKIHGKKVCIDRVQESSISRVGDVGNTASNAIVQQTHEN 115

Query: 178 LTTQNLVPNM-LPLRARSFVSDGNVSALPLVSQQSRYQLGLGTPRSMQDQGSGSLVNIPG 236
              QNL PN+ + LR+++F+ D ++   P+++ QSRY + +GT RS+Q+QG    +N   
Sbjct: 116 PAMQNLSPNVAMALRSKNFIPDSSIPNFPMMTHQSRYAMAVGTQRSLQEQGPAPSINSSV 175

Query: 237 ASPAGQDMMITYGDHINSGASLHGKRENQDGQMSPLSSFNKRARVTSVGPDGMQQQQLGP 296
           ASPA Q     Y D+ NSGASL GKR+NQDGQ SPLS+  KR R  S   D MQ QQ+G 
Sbjct: 176 ASPATQ-----YADNANSGASLLGKRDNQDGQASPLSNIAKRMRPGSTVVDAMQHQQIGS 230

Query: 297 HIDGLHASDMNWKNSLLPHQATARGIHYANTGIQKYPQQVFEGVMNQNAMPTSFSAPQQG 356
           H++ L  SDMNW+NSL   Q  ARGI YA+ GIQK+PQQVFEG  NQ      F++ QQG
Sbjct: 231 HVEALQGSDMNWQNSLQ-QQPMARGIQYASGGIQKFPQQVFEGGANQETGAIPFASSQQG 289

Query: 357 VRFGPKEEQFETEKLDVSELNQGKNDMMDTEMGHXX-XXXXXXXXXXXXXXMRSNFSQTA 415
           +R   KEEQFE EKLD +E+N  K+D M+ EM +                 MR NF Q A
Sbjct: 290 MRLVAKEEQFEMEKLDGAEINCNKSD-MEMEMNNLDPQQLRLQQRLPQHAFMRPNFPQAA 348

Query: 416 WNNLSQ----DSRKEEQIQGKRKTVQSPRLSAGTFPQ 448
           WN+L Q    +++KE+Q+Q KRK+VQSPRLS+   P 
Sbjct: 349 WNSLGQHMGKETKKEDQLQ-KRKSVQSPRLSSAALPH 384


>Glyma14g38480.1 
          Length = 187

 Score =  109 bits (272), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/126 (50%), Positives = 78/126 (61%), Gaps = 22/126 (17%)

Query: 1   AIESGRLPGDILDDIPRKYVNGTLICE-----------------VRDYRKCPPEQGSCIP 43
           AIES  LPGDIL+DIP KYV+  +ICE                 + DYR+C   +G  + 
Sbjct: 25  AIESHHLPGDILNDIPAKYVDRAVICERVSYGPICTLSIFLLFAIHDYRRCSSRKGDSV- 83

Query: 44  SVGWLPIVNRVRLRMSLENVVKDIPLISDNSWTYGDLMEVESRILKALQPRLFLDPTPKL 103
           S    P V+++ L+MSLEN+VKDIP       T    MEVES+ILKALQP+L LDPTPKL
Sbjct: 84  SAESSPTVSKLCLKMSLENIVKDIP----RLLTSLRHMEVESKILKALQPKLQLDPTPKL 139

Query: 104 DRLCNN 109
           DRLC N
Sbjct: 140 DRLCEN 145


>Glyma16g01260.1 
          Length = 150

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/28 (82%), Positives = 24/28 (85%)

Query: 1   AIESGRLPGDILDDIPRKYVNGTLICEV 28
           AIESG LPGDILDDIP KYV+G LIC V
Sbjct: 110 AIESGHLPGDILDDIPAKYVDGALICVV 137