Jatropha Genome Database

JcCB0393011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0393011.10 + phase: 0 
         (67 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g26540.1                                                        69   1e-12
Glyma17g26540.2                                                        68   3e-12

>Glyma17g26540.1 
          Length = 240

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 2   QLHCDHGLQGFQWNTIFGFQHQETSENYTRIGKADSSERELAVRAAAASIYSTCSFLMSK 61
           QL CD G+Q   W++ FG Q    SEN +R    DSSE++LAV AAAASIYSTC+FL+S+
Sbjct: 181 QLLCDQGIQHVNWSSAFGLQQLGNSENNSR-ATFDSSEKDLAVNAAAASIYSTCNFLLSE 239


>Glyma17g26540.2 
          Length = 219

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 2   QLHCDHGLQGFQWNTIFGFQHQETSENYTRIGKADSSERELAVRAAAASIYSTCSFLMSK 61
           QL CD G+Q   W++ FG Q    SEN +R    DSSE++LAV AAAASIYSTC+FL+S+
Sbjct: 160 QLLCDQGIQHVNWSSAFGLQQLGNSENNSR-ATFDSSEKDLAVNAAAASIYSTCNFLLSE 218