Jatropha Genome Database

JcCB0392311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0392311.10 + phase: 0 
         (143 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g29070.1                                                       110   3e-25
Glyma15g09980.1                                                       105   1e-23
Glyma05g27280.1                                                       105   2e-23
Glyma08g10220.1                                                       104   4e-23

>Glyma13g29070.1 
          Length = 138

 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 83/137 (60%), Gaps = 5/137 (3%)

Query: 1   MRRNCNLELRLFPFPDSDDDHRRYFVDESNK-SPXXX--XXXXXXXXXXXXKLTIFYNGN 57
           MRRNCNLEL LF   DS   H    V+E+++ SP                  LTIFY+GN
Sbjct: 1   MRRNCNLELALFLPSDSGPRHHHSMVEEASEISPIQNFFHHHHRQEQQQQQPLTIFYDGN 60

Query: 58  ICVCDVTELQARNILMLASREMDDKIRSAXXXXXXXXXXXXX--XVYSPNNGLSMKRSLQ 115
           ICV DVTELQA++IL+LA+R++++++R+                 +YSP  GLSM++SLQ
Sbjct: 61  ICVADVTELQAKSILLLANRKLEERVRTPTGSEPSSPAVMQSNNQLYSPGTGLSMRKSLQ 120

Query: 116 RFLQKRNHRIQATYPYN 132
           RFLQKR +R+Q   PY+
Sbjct: 121 RFLQKRKNRVQEASPYH 137


>Glyma15g09980.1 
          Length = 133

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/135 (44%), Positives = 76/135 (56%), Gaps = 8/135 (5%)

Query: 1   MRRNCNLELRLFPFPDSDDDHRRYFVD--ESNKSPXXXXXXXXXXXXXXXKLTIFYNGNI 58
           MRRNCNLEL LFP  DS        VD  E   S                 LTIFY+G I
Sbjct: 1   MRRNCNLELALFPPSDSGPP----MVDNVEEEASEISPMQNLFHRQEQQQPLTIFYDGKI 56

Query: 59  CVCDVTELQARNILMLASREMDDKIRSAXXXXXXXXXXXXX--XVYSPNNGLSMKRSLQR 116
           CV DVTELQA++ILMLA+R++++++R+                 +YSP  G SM++SLQR
Sbjct: 57  CVADVTELQAKSILMLANRKLEERVRTPTGSEPSSPTVMQSNNQLYSPGTGPSMRKSLQR 116

Query: 117 FLQKRNHRIQATYPY 131
           FLQKR +R+Q   PY
Sbjct: 117 FLQKRRNRVQEASPY 131


>Glyma05g27280.1 
          Length = 134

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 78/135 (57%), Gaps = 5/135 (3%)

Query: 1   MRRNCNLELRLFPFPDSDDDHRRYFVDESNKSPXXXXXXXXXXXXXXXKLTIFYNGNICV 60
           MR+NC LELRLFP   S  D R     E + SP                LTIFY+G ICV
Sbjct: 1   MRKNCKLELRLFP--PSLSDLRPMMEAEVSDSPQQQDPHHQQQQQLQHPLTIFYDGKICV 58

Query: 61  CDVTELQARNILMLASREMDDKIRSAXXXXXXXXXXXXXX---VYSPNNGLSMKRSLQRF 117
            DVTELQAR+ILMLA++E + ++ +                  +YSP+ GLSMKRSLQRF
Sbjct: 59  SDVTELQARSILMLANKETERRVMTPTGSEPSSPILLQSPHNNMYSPSTGLSMKRSLQRF 118

Query: 118 LQKRNHRIQATYPYN 132
           LQKR +R+Q T PY+
Sbjct: 119 LQKRKNRVQETSPYH 133


>Glyma08g10220.1 
          Length = 150

 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 77/136 (56%), Gaps = 6/136 (4%)

Query: 1   MRRNCNLELRLFPFPDSDDDHRRYFVDESNK--SPXXXXXXXXXXXXXXXKLTIFYNGNI 58
           MR+NCNLELRLFP   S  D R     E ++                    LTIFY+G I
Sbjct: 1   MRKNCNLELRLFP--PSLSDLRPMMEAEVSERPQQQVAHHQQQQQPQPQHPLTIFYDGKI 58

Query: 59  CVCDVTELQARNILMLASREMDDKIRS--AXXXXXXXXXXXXXXVYSPNNGLSMKRSLQR 116
            V DVTELQAR+ILMLA++EM+ ++ +                 +YSP  GLSMKRSLQR
Sbjct: 59  SVSDVTELQARSILMLANKEMEKRVMTPTGSEPSSPILLQSPHNMYSPGTGLSMKRSLQR 118

Query: 117 FLQKRNHRIQATYPYN 132
           FLQKR +R+Q T PY+
Sbjct: 119 FLQKRKNRVQETSPYH 134