Jatropha Genome Database

JcCB0386201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0386201.10 - phase: 0 
         (218 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g43120.1                                                       149   2e-36
Glyma10g43120.3                                                       148   3e-36
Glyma20g23790.1                                                       147   1e-35
Glyma10g43120.2                                                       132   2e-31

>Glyma10g43120.1 
          Length = 344

 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 98/170 (57%), Gaps = 3/170 (1%)

Query: 44  GDEEEQEAQPPRQSSRRTPFTNLSQVDADLALARTLQEQERAYMMLRFGNEGSDYGSWEA 103
           G+E    A  PRQ SR TPFTNLSQVDADLALARTLQEQERAYMMLR  N+GSDYGSWE 
Sbjct: 69  GEETGSAAPNPRQPSR-TPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEG 127

Query: 104 GSY--FPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMDAFDVHAHTDADVDNNPAVD 161
           GSY                                     DAFD HAH  A   +NP+++
Sbjct: 128 GSYLHDDGDDFDDLHDGTDVDEDEDEDDDEDDENEEYEDEDAFDAHAHASAGEHDNPSIE 187

Query: 162 LDPAMFSSDEAYARALQDXXXXXXXXXXXXXXGINEREVEDVEDLGANSQ 211
            DP +FSSDEAYARALQ+              GIN+RE ED+E+ GANSQ
Sbjct: 188 FDPDLFSSDEAYARALQEAEEREMAVRLLALAGINDREEEDIEEHGANSQ 237


>Glyma10g43120.3 
          Length = 308

 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 98/170 (57%), Gaps = 3/170 (1%)

Query: 44  GDEEEQEAQPPRQSSRRTPFTNLSQVDADLALARTLQEQERAYMMLRFGNEGSDYGSWEA 103
           G+E    A  PRQ SR TPFTNLSQVDADLALARTLQEQERAYMMLR  N+GSDYGSWE 
Sbjct: 69  GEETGSAAPNPRQPSR-TPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEG 127

Query: 104 GSY--FPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMDAFDVHAHTDADVDNNPAVD 161
           GSY                                     DAFD HAH  A   +NP+++
Sbjct: 128 GSYLHDDGDDFDDLHDGTDVDEDEDEDDDEDDENEEYEDEDAFDAHAHASAGEHDNPSIE 187

Query: 162 LDPAMFSSDEAYARALQDXXXXXXXXXXXXXXGINEREVEDVEDLGANSQ 211
            DP +FSSDEAYARALQ+              GIN+RE ED+E+ GANSQ
Sbjct: 188 FDPDLFSSDEAYARALQEAEEREMAVRLLALAGINDREEEDIEEHGANSQ 237


>Glyma20g23790.1 
          Length = 335

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/159 (53%), Positives = 93/159 (58%), Gaps = 3/159 (1%)

Query: 55  RQSSRRTPFTNLSQVDADLALARTLQEQERAYMMLRFGNEGSDYGSWEAGSYFPXXXX-- 112
           RQ SR TPFTNLSQVDADLALARTLQEQERAYMMLR  NEGSDYGSWE GSY        
Sbjct: 71  RQPSR-TPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEGGSYLHDEGDDF 129

Query: 113 XXXXXXXXXXXXXXXXXXXXXXXXXXXSMDAFDVHAHTDADVDNNPAVDLDPAMFSSDEA 172
                                        DAFDVHAH  A   +NP ++ DP +FSSDEA
Sbjct: 130 DDLHDGTDVDEDEDDDDDEDDDDEEDEDEDAFDVHAHASAGEHDNPTIEFDPDVFSSDEA 189

Query: 173 YARALQDXXXXXXXXXXXXXXGINEREVEDVEDLGANSQ 211
           YARALQ+              GIN+RE ED+E+ GANSQ
Sbjct: 190 YARALQEAEEREMAARLLAFAGINDREEEDIEEHGANSQ 228


>Glyma10g43120.2 
          Length = 229

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/159 (49%), Positives = 88/159 (55%), Gaps = 3/159 (1%)

Query: 44  GDEEEQEAQPPRQSSRRTPFTNLSQVDADLALARTLQEQERAYMMLRFGNEGSDYGSWEA 103
           G+E    A  PRQ SR TPFTNLSQVDADLALARTLQEQERAYMMLR  N+GSDYGSWE 
Sbjct: 69  GEETGSAAPNPRQPSR-TPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEG 127

Query: 104 GSY--FPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMDAFDVHAHTDADVDNNPAVD 161
           GSY                                     DAFD HAH  A   +NP+++
Sbjct: 128 GSYLHDDGDDFDDLHDGTDVDEDEDEDDDEDDENEEYEDEDAFDAHAHASAGEHDNPSIE 187

Query: 162 LDPAMFSSDEAYARALQDXXXXXXXXXXXXXXGINEREV 200
            DP +FSSDEAYARALQ+              GIN+R+ 
Sbjct: 188 FDPDLFSSDEAYARALQEAEEREMAVRLLALAGINDRKF 226