Jatropha Genome Database

JcCB0381561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0381561.10 - phase: 0 /partial
         (163 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g02320.1                                                       241   2e-64
Glyma11g09980.1                                                       240   4e-64

>Glyma12g02320.1 
          Length = 374

 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/163 (69%), Positives = 128/163 (78%), Gaps = 4/163 (2%)

Query: 1   MFSVRSIFRPQQLRXXXXXXXXXXXXXXXXXXXTQAERTIKEGPRNDWTRHEIKDVYDSP 60
           MF  R IFR   L                     QAERTIKEGPRNDW+R ++K +YDSP
Sbjct: 1   MFLARPIFRGPSL----WALHSSYAYSSASAAAIQAERTIKEGPRNDWSRDQVKSIYDSP 56

Query: 61  LLDLLFHGAQVHRHAQNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYKTGLKAQKLMTKD 120
           +LDLLFHGAQVHRHA NFREVQQCTLLSIKTGGCSEDCSYCPQSS+Y TG+K Q+LM K+
Sbjct: 57  ILDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSKYDTGVKGQRLMNKE 116

Query: 121 DVMEAAKRAKEAGSTRFCMGAAWRDTVGRNTNFNQILDYVKEI 163
            V++AAK+AKEAGSTRFCMGAAWRDT+GR TNFNQIL+YVK+I
Sbjct: 117 AVLQAAKKAKEAGSTRFCMGAAWRDTLGRKTNFNQILEYVKDI 159


>Glyma11g09980.1 
          Length = 374

 Score =  240 bits (613), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 112/163 (68%), Positives = 127/163 (77%), Gaps = 4/163 (2%)

Query: 1   MFSVRSIFRPQQLRXXXXXXXXXXXXXXXXXXXTQAERTIKEGPRNDWTRHEIKDVYDSP 60
           MF  R IFR   L                     QAER IKEGPRNDW+R ++K +YDSP
Sbjct: 1   MFLARPIFRAPSL----WALHSSYAYSSASAAAIQAERAIKEGPRNDWSRDQVKSIYDSP 56

Query: 61  LLDLLFHGAQVHRHAQNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYKTGLKAQKLMTKD 120
           +LDLLFHGAQVHRHA NFREVQQCTLLSIKTGGCSEDCSYCPQSS+Y TG+K Q+LM K+
Sbjct: 57  ILDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSKYDTGVKGQRLMNKE 116

Query: 121 DVMEAAKRAKEAGSTRFCMGAAWRDTVGRNTNFNQILDYVKEI 163
            V++AAK+AKEAGSTRFCMGAAWRDT+GR TNFNQIL+YVK+I
Sbjct: 117 AVLQAAKKAKEAGSTRFCMGAAWRDTLGRKTNFNQILEYVKDI 159