Jatropha Genome Database

JcCB0374621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0374621.10 - phase: 1 /pseudo/partial
         (340 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g18930.1                                                        92   6e-19

>Glyma18g18930.1 
          Length = 490

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 26/234 (11%)

Query: 118 QSSCLAEMEKSEADVFSCGIDKLTSGLGGCSDFSVANVSHRLGKELKSLSENCKFDGSDK 177
           Q +C+A M+  + +    GI+KLTSG+GGCSD+++ +V +  G   + L+E+C     + 
Sbjct: 1   QENCIASMQAFDKNFTCYGIEKLTSGVGGCSDYTITDVINHHGDNFRRLNEDCMPFRRNG 60

Query: 178 ESGELCSSCINSWQYIKEKHPS--GND-------ICRFAILISLTSTRIDDEIYIHRVFK 228
              E C+ C+ +W+ I  K  S  G++       +CRFA+L+S+TSTRI D   I  V+K
Sbjct: 61  RPNETCTKCLKAWEDISAKSDSTRGSESANINVYLCRFAVLVSITSTRIYDRESIQEVYK 120

Query: 229 CLENDKKQFISNVYQIQQNQKGK*SLKLVQVSGS*LVAL*ELQ****LLPQKICLDVVKN 288
            L          +  + Q  K K S      S    +A          +     +  +  
Sbjct: 121 YLGE------HTLSAVNQEVKVKASANANINSAGLWIAF--------GITGVTAVVFLAA 166

Query: 289 QKIHLKRM--ADSVNSVAAFRNMRLKESRCSKFPLKEICSATENLSEKNLIGEG 340
             + + R+  A +V  VA F N    +S   K  LK++  AT NLS  N IG+G
Sbjct: 167 LALFITRIKSAPTVQDVALF-NYPESDSTSPKITLKDVYVATNNLSASNFIGQG 219