Jatropha Genome Database

JcCB0374611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0374611.10 - phase: 1 /pseudo
         (114 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g21320.1                                                       102   8e-23
Glyma17g18240.1                                                       102   9e-23
Glyma04g04530.2                                                        89   1e-18
Glyma04g04530.3                                                        89   1e-18
Glyma04g04530.1                                                        89   1e-18
Glyma06g04620.1                                                        88   2e-18
Glyma06g04620.2                                                        88   2e-18

>Glyma05g21320.1 
          Length = 319

 Score =  102 bits (255), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 59/82 (71%)

Query: 28  DSIGEILKGIRCYFDKALPVMLLYKKERQQYYSSVENDTSPSTIYGAEHLLRLFGILITL 87
           DSIGEILKGIRCYFDKALP+MLLYKKER+QY  ++ ++ SPSTIYGAEHLLRLF  L  L
Sbjct: 208 DSIGEILKGIRCYFDKALPMMLLYKKERKQYNDAIVDNVSPSTIYGAEHLLRLFVKLPEL 267

Query: 88  MLCFCFFEQGRVTVQSSFLRIL 109
           +      E+    +Q   L  L
Sbjct: 268 LAYVTIEEETLNRLQQKLLDFL 289


>Glyma17g18240.1 
          Length = 369

 Score =  102 bits (254), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/82 (62%), Positives = 59/82 (71%)

Query: 28  DSIGEILKGIRCYFDKALPVMLLYKKERQQYYSSVENDTSPSTIYGAEHLLRLFGILITL 87
           DSIGEILKGIRCYFDKALP+MLLYKKER+QY  S+ ++ SPSTIYGAEHLLRLF  L  L
Sbjct: 258 DSIGEILKGIRCYFDKALPMMLLYKKERKQYNDSIVDNVSPSTIYGAEHLLRLFVKLPEL 317

Query: 88  MLCFCFFEQGRVTVQSSFLRIL 109
           +      E+    +Q   L  L
Sbjct: 318 LAYVTIEEETLNRLQQKLLDFL 339


>Glyma04g04530.2 
          Length = 322

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 28  DSIGEILKGIRCYFDKALPVMLLYKKERQQYYSSVENDTSPSTIYGAEHLLRLFGILITL 87
           DS+ EI+KG+ CYFDKALPVMLLYK ERQQY  +   +  PS IYGAEHLLRLF  L  L
Sbjct: 208 DSVEEIMKGLSCYFDKALPVMLLYKNERQQYQEACPANVFPSAIYGAEHLLRLFVKLPEL 267

Query: 88  MLCFCFFEQGRVTVQS---SFLRIL 109
           +      E+  + +Q+    FLR L
Sbjct: 268 LFHASVEEETLMELQAHLIDFLRFL 292


>Glyma04g04530.3 
          Length = 313

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 28  DSIGEILKGIRCYFDKALPVMLLYKKERQQYYSSVENDTSPSTIYGAEHLLRLFGILITL 87
           DS+ EI+KG+ CYFDKALPVMLLYK ERQQY  +   +  PS IYGAEHLLRLF  L  L
Sbjct: 208 DSVEEIMKGLSCYFDKALPVMLLYKNERQQYQEACPANVFPSAIYGAEHLLRLFVKLPEL 267

Query: 88  MLCFCFFEQGRVTVQS---SFLRIL 109
           +      E+  + +Q+    FLR L
Sbjct: 268 LFHASVEEETLMELQAHLIDFLRFL 292


>Glyma04g04530.1 
          Length = 323

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 28  DSIGEILKGIRCYFDKALPVMLLYKKERQQYYSSVENDTSPSTIYGAEHLLRLFGILITL 87
           DS+ EI+KG+ CYFDKALPVMLLYK ERQQY  +   +  PS IYGAEHLLRLF  L  L
Sbjct: 209 DSVEEIMKGLSCYFDKALPVMLLYKNERQQYQEACPANVFPSAIYGAEHLLRLFVKLPEL 268

Query: 88  MLCFCFFEQGRVTVQS---SFLRIL 109
           +      E+  + +Q+    FLR L
Sbjct: 269 LFHASVEEETLMELQAHLIDFLRFL 293


>Glyma06g04620.1 
          Length = 325

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 28  DSIGEILKGIRCYFDKALPVMLLYKKERQQYYSSVENDTSPSTIYGAEHLLRLFGILITL 87
           DS+ EI+KG+ CYFDKALPVMLLYK E QQY  +   +  PS IYGAEHLLRLF  L  L
Sbjct: 214 DSVEEIMKGLSCYFDKALPVMLLYKNEHQQYQEACPANVFPSAIYGAEHLLRLFVKLPEL 273

Query: 88  MLCFCFFEQGRVTVQS---SFLRIL 109
           +      E+  V +Q+    FLR L
Sbjct: 274 LFHASIEEKTLVELQAHLIDFLRFL 298


>Glyma06g04620.2 
          Length = 280

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 47/60 (78%)

Query: 28  DSIGEILKGIRCYFDKALPVMLLYKKERQQYYSSVENDTSPSTIYGAEHLLRLFGILITL 87
           DS+ EI+KG+ CYFDKALPVMLLYK E QQY  +   +  PS IYGAEHLLRLFG+L+ L
Sbjct: 214 DSVEEIMKGLSCYFDKALPVMLLYKNEHQQYQEACPANVFPSAIYGAEHLLRLFGMLVCL 273