Jatropha Genome Database

JcCB0369541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0369541.10 + phase: 0 /pseudo/partial
         (85 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g35710.1                                                        94   4e-20
Glyma06g04550.1                                                        90   7e-19
Glyma04g04420.1                                                        69   9e-13
Glyma02g03740.1                                                        65   2e-11
Glyma01g03940.1                                                        65   2e-11
Glyma08g39960.1                                                        57   6e-09

>Glyma17g35710.1 
          Length = 347

 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 48/63 (76%)

Query: 1  MASGLPMLNCLLQHTLRXXXXXXXXXXXXKWVYAVFWRILPRNYPPPKWDYGGTALDRSK 60
          M SG+P L+CLLQ+TLR            KWVYAVFWRI+PRN+PPP+W++GGTALDRSK
Sbjct: 1  MESGVPFLDCLLQNTLRSICSFPTSSTSSKWVYAVFWRIVPRNFPPPRWEFGGTALDRSK 60

Query: 61 GTK 63
          G K
Sbjct: 61 GNK 63


>Glyma06g04550.1 
          Length = 323

 Score = 89.7 bits (221), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 46/63 (73%)

Query: 1  MASGLPMLNCLLQHTLRXXXXXXXXXXXXKWVYAVFWRILPRNYPPPKWDYGGTALDRSK 60
          M SGLP+LN LLQ TLR            KWVYAVFWRILPRN+PPP+W++GGTALD SK
Sbjct: 1  MESGLPLLNYLLQQTLRTICTSPNSSTPSKWVYAVFWRILPRNFPPPRWEFGGTALDLSK 60

Query: 61 GTK 63
          G K
Sbjct: 61 GNK 63


>Glyma04g04420.1 
          Length = 264

 Score = 69.3 bits (168), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/50 (62%), Positives = 34/50 (68%)

Query: 14 HTLRXXXXXXXXXXXXKWVYAVFWRILPRNYPPPKWDYGGTALDRSKGTK 63
           TLR            KWVYAVFWRILPRN+PPP+W+ GGTALD SKG K
Sbjct: 1  QTLRTICTSPNSSTPSKWVYAVFWRILPRNFPPPRWELGGTALDLSKGNK 50


>Glyma02g03740.1 
          Length = 385

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 36/53 (67%), Gaps = 5/53 (9%)

Query: 11 LLQHTLRXXXXXXXXXXXXKWVYAVFWRILPRNYPPPKWDYGGTALDRSKGTK 63
          LLQHTLR            +WVYAVFWRILPRNYPPPKW+ G  A DRS+G +
Sbjct: 13 LLQHTLRSLCSHENS----QWVYAVFWRILPRNYPPPKWE-GQGAYDRSRGNR 60


>Glyma01g03940.1 
          Length = 376

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 36/53 (67%), Gaps = 5/53 (9%)

Query: 11 LLQHTLRXXXXXXXXXXXXKWVYAVFWRILPRNYPPPKWDYGGTALDRSKGTK 63
          LLQHTLR            +WVYAVFWRILPRNYPPPKW+ G  A DRS+G +
Sbjct: 13 LLQHTLRSLCIHENS----QWVYAVFWRILPRNYPPPKWE-GQGAYDRSRGNR 60


>Glyma08g39960.1 
          Length = 316

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 11 LLQHTLRXXXXXXXXXXXXKWVYAVFWRILPRNYPPPKWDYGGTALDRSKGTK 63
          LLQ TLR            +WVY VFWRI+PRNYPPPKW+    A D+S+G +
Sbjct: 13 LLQQTLRSLCIHQNS----QWVYVVFWRIVPRNYPPPKWE-SEAANDKSRGNR 60