Jatropha Genome Database

JcCB0368851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0368851.10 - phase: 0 /pseudo
         (66 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g05350.1                                                        49   2e-06
Glyma16g05350.2                                                        48   2e-06

>Glyma16g05350.1 
          Length = 137

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 3/64 (4%)

Query: 1  MQAALTIAPP-VVPLKPSKNLSQVTFSPPKFGVSSIAPRSSAIKAATATVEYEPSTVDYS 59
          MQ ALT A P VVPL P+K++S +T  P K      +PR S I+   ATVE + STVDY+
Sbjct: 1  MQTALTFAAPNVVPLAPTKSVSHITIFPTKLKAPRSSPRYSPIRV--ATVEPDTSTVDYN 58

Query: 60 STLS 63
          S  S
Sbjct: 59 SAFS 62


>Glyma16g05350.2 
          Length = 113

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 3/64 (4%)

Query: 1  MQAALTIAPP-VVPLKPSKNLSQVTFSPPKFGVSSIAPRSSAIKAATATVEYEPSTVDYS 59
          MQ ALT A P VVPL P+K++S +T  P K      +PR S I+   ATVE + STVDY+
Sbjct: 1  MQTALTFAAPNVVPLAPTKSVSHITIFPTKLKAPRSSPRYSPIRV--ATVEPDTSTVDYN 58

Query: 60 STLS 63
          S  S
Sbjct: 59 SAFS 62