Jatropha Genome Database

JcCB0368291.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0368291.20 - phase: 0 
         (84 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g02260.1                                                       102   1e-22
Glyma06g02320.1                                                       100   5e-22
Glyma20g23980.1                                                        87   3e-18
Glyma10g43000.1                                                        87   3e-18

>Glyma04g02260.1 
          Length = 430

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/56 (80%), Positives = 53/56 (94%)

Query: 1  MEKLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDECSLAIYLSGFQQAV 56
          M+KL GLSHLFMT FLHNFS +MVVPAITDVTM+A+CPG+DECSLAIY++GFQQA+
Sbjct: 1  MDKLYGLSHLFMTVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAM 56


>Glyma06g02320.1 
          Length = 387

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 52/56 (92%)

Query: 1  MEKLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDECSLAIYLSGFQQAV 56
          M+KL GLSHLFM  FLHNFS +MVVPAITDVTM+A+CPG+DECSLAIY++GFQQA+
Sbjct: 1  MDKLYGLSHLFMAVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAM 56


>Glyma20g23980.1 
          Length = 443

 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 47/56 (83%)

Query: 1  MEKLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDECSLAIYLSGFQQAV 56
          ME L GL HLF+T F+  F   +V+PAITDVTM+A+CPG+D+CSLAIYLSGFQQA+
Sbjct: 1  MEGLGGLGHLFVTMFVSGFGGVIVLPAITDVTMAALCPGQDQCSLAIYLSGFQQAM 56


>Glyma10g43000.1 
          Length = 443

 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 47/56 (83%)

Query: 1  MEKLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDECSLAIYLSGFQQAV 56
          ME L GL HLF+T F+  F   +V+PAITDVTM+A+CPG+D+CSLAIYLSGFQQA+
Sbjct: 1  MEGLGGLGHLFVTMFVTGFGGVIVLPAITDVTMAALCPGQDQCSLAIYLSGFQQAM 56