Jatropha Genome Database

JcCB0368291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0368291.10 - phase: 0 /pseudo/partial/short
         (47 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g02260.1                                                        59   1e-09
Glyma06g02320.1                                                        57   4e-09

>Glyma04g02260.1 
          Length = 430

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query: 7  LSHLLLTFFLYNFSTFMVTPAMTDVTMSALCPGQ 40
          LSHL +T FL+NFS FMV PA+TDVTM+ALCPGQ
Sbjct: 7  LSHLFMTVFLHNFSMFMVVPAITDVTMAALCPGQ 40


>Glyma06g02320.1 
          Length = 387

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 29/34 (85%)

Query: 7  LSHLLLTFFLYNFSTFMVTPAMTDVTMSALCPGQ 40
          LSHL +  FL+NFS FMV PA+TDVTM+ALCPGQ
Sbjct: 7  LSHLFMAVFLHNFSMFMVVPAITDVTMAALCPGQ 40