Jatropha Genome Database

JcCB0367281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0367281.10 - phase: 0 /pseudo/partial
         (120 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g04300.1                                                        97   3e-21
Glyma17g14760.1                                                        84   4e-17
Glyma01g28530.1                                                        50   5e-07

>Glyma05g04300.1 
          Length = 398

 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 1   MSLSLQSPPFSALYSKSFLQXXXXXXXXXXXXXX--XXIFFKLQRSFPQIRASSGFSSSL 58
           MSL+LQ+PP + L S S +                   + F   RS P IRAS+   SS+
Sbjct: 1   MSLTLQTPPSTTLSSASPIHRTITRYTTFSFSLRPPTTLHFNPHRSLPLIRASN---SSI 57

Query: 59  DTGASTELDAVSSFSEIVPDTVIFDDFEKFPPTAATVSSSLLFGM 103
           +  ++TELDAVS+FSEIVPDTV+FDDFEKFPPTAATVSSSLL G+
Sbjct: 58  NAASTTELDAVSAFSEIVPDTVVFDDFEKFPPTAATVSSSLLLGI 102


>Glyma17g14760.1 
          Length = 397

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 51/65 (78%), Gaps = 3/65 (4%)

Query: 39  FKLQRSFPQIRASSGFSSSLDTGASTELDAVSSFSEIVPDTVIFDDFEKFPPTAATVSSS 98
           F    S    RAS+   SS+ T ++TELDAVSSFSEIVPDTV+FDDFEKFPPTAATVSSS
Sbjct: 40  FNSHSSLSLTRASA---SSITTASTTELDAVSSFSEIVPDTVVFDDFEKFPPTAATVSSS 96

Query: 99  LLFGM 103
           LL G+
Sbjct: 97  LLLGI 101


>Glyma01g28530.1 
          Length = 146

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 29/38 (76%), Gaps = 6/38 (15%)

Query: 72  FSEIVPDTVIFDDFE------KFPPTAATVSSSLLFGM 103
           F EIVPDTV+F+DFE      KFPPTAATV+S LL G+
Sbjct: 37  FYEIVPDTVVFNDFEKHLRCCKFPPTAATVNSLLLLGI 74