Jatropha Genome Database

JcCB0365891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0365891.10 + phase: 2 /pseudo/partial
         (154 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g39900.1                                                        74   6e-14
Glyma18g46310.1                                                        69   2e-12

>Glyma09g39900.1 
          Length = 276

 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 6/102 (5%)

Query: 27  KFKGVVNPATLRKRL----QKISRMLEKVGKAVAPTGEGESMSRMASLSEGPTLFKSPSK 82
           + +GV +P  LRK +     KI++ +   GK   P+ + E+++RM   +EG  + +SPSK
Sbjct: 167 QVQGVSDPFVLRKMIVTEASKITQDVSTSGKHAGPSTDEENIARMPGATEGSVVLRSPSK 226

Query: 83  SWKMTGSPRYASMEPRSPIIGDVVLNKIEEVSRSVKVWNFLV 124
           S KM GSP  +S+E R  + G ++LNK+EEV++SVK    L+
Sbjct: 227 SLKMVGSPHTSSLECR--VAGGLLLNKLEEVNKSVKRLELLI 266


>Glyma18g46310.1 
          Length = 276

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 63/102 (61%), Gaps = 6/102 (5%)

Query: 27  KFKGVVNPATLRKRL----QKISRMLEKVGKAVAPTGEGESMSRMASLSEGPTLFKSPSK 82
           + +GV +P+ LRK +     KI++ +   G    P+ + E+++ M   +EG  + +SPSK
Sbjct: 167 QVQGVSDPSLLRKMIITEASKITQDVSTSGNHAGPSTDVENIALMPRATEGSVVLRSPSK 226

Query: 83  SWKMTGSPRYASMEPRSPIIGDVVLNKIEEVSRSVKVWNFLV 124
           S KM GSP  +S+E R  + G ++LNK+EEV++SVK    L+
Sbjct: 227 SLKMAGSPHTSSLERR--VTGGLLLNKLEEVNKSVKRLELLI 266