Jatropha Genome Database

JcCB0360101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0360101.10 + phase: 0 /partial
         (62 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g06860.1                                                       122   7e-29
Glyma07g30380.1                                                       118   2e-27
Glyma17g11600.2                                                        91   2e-19
Glyma17g11600.1                                                        91   2e-19
Glyma13g23230.1                                                        91   3e-19

>Glyma08g06860.1 
          Length = 541

 Score =  122 bits (307), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/62 (83%), Positives = 56/62 (90%)

Query: 1   IARNITTNELANAIRYGYLRGPDGRFRNPYNHGCRKNCADFIIQGYTDDDEIAWPPLQQV 60
           IARN+TTNELAN+ RY YLRGPDGRFRNPYNHGC KNCADF   GYT+DDEIAWPPLQQV
Sbjct: 480 IARNVTTNELANSSRYDYLRGPDGRFRNPYNHGCWKNCADFFFLGYTNDDEIAWPPLQQV 539

Query: 61  AS 62
           A+
Sbjct: 540 AT 541


>Glyma07g30380.1 
          Length = 540

 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 52/62 (83%), Positives = 57/62 (91%)

Query: 1   IARNITTNELANAIRYGYLRGPDGRFRNPYNHGCRKNCADFIIQGYTDDDEIAWPPLQQV 60
           IARN+TTNELAN+ RY YLRGPDGRFRNPYNHGC KNCADF+  GYT+DDEIAWPPLQQV
Sbjct: 479 IARNVTTNELANSSRYDYLRGPDGRFRNPYNHGCWKNCADFLFLGYTNDDEIAWPPLQQV 538

Query: 61  AS 62
           A+
Sbjct: 539 AT 540


>Glyma17g11600.2 
          Length = 512

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query: 1   IARNITTNELANAIRYGYLRGPDGRFRNPYNHGCRKNCADFIIQGYTDDDE 51
           I+RNITTNE+ANA+RY YLRGP GRFRNPY+HG +KNC+DF+I GY +D E
Sbjct: 359 ISRNITTNEMANAMRYSYLRGPGGRFRNPYDHGIKKNCSDFLINGYNEDVE 409


>Glyma17g11600.1 
          Length = 633

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query: 1   IARNITTNELANAIRYGYLRGPDGRFRNPYNHGCRKNCADFIIQGYTDDDE 51
           I+RNITTNE+ANA+RY YLRGP GRFRNPY+HG +KNC+DF+I GY +D E
Sbjct: 480 ISRNITTNEMANAMRYSYLRGPGGRFRNPYDHGIKKNCSDFLINGYNEDVE 530


>Glyma13g23230.1 
          Length = 675

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query: 1   IARNITTNELANAIRYGYLRGPDGRFRNPYNHGCRKNCADFIIQGYTDDDE 51
           I+RNITTNE+ANA+RY YLRGP GRFRNPY+HG +KNC+DF+I GY +D E
Sbjct: 524 ISRNITTNEMANALRYNYLRGPGGRFRNPYDHGIKKNCSDFLINGYNEDIE 574