Jatropha Genome Database

JcCB0352111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0352111.10 - phase: 0 /partial
         (62 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g22810.1                                                       107   3e-24
Glyma07g03300.1                                                        92   2e-19
Glyma07g03300.2                                                        83   8e-17

>Glyma08g22810.1 
          Length = 168

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 1   IFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKGRREEAQKLLKEALGTLDG 59
           +FKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIK RREEA++LL E+L TLDG
Sbjct: 109 VFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKKRREEARRLLNESLATLDG 167


>Glyma07g03300.1 
          Length = 168

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 1   IFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKGRREEAQKLLKEALGTLDG 59
           +FKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIK RREEA++LL E+L TLDG
Sbjct: 109 VFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEARRLLNESLATLDG 167


>Glyma07g03300.2 
          Length = 161

 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/40 (97%), Positives = 40/40 (100%)

Query: 1   IFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIK 40
           +FKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIK
Sbjct: 109 VFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIK 148