Jatropha Genome Database

JcCB0351641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0351641.10 + phase: 0 /partial
         (130 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g07450.1                                                       148   1e-36
Glyma02g41500.1                                                       125   2e-29

>Glyma14g07450.1 
          Length = 416

 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 94/125 (75%), Gaps = 4/125 (3%)

Query: 6   MAMLQHVCSVPLARAVRQPHSFTIVSSRKLRTTSSAVSPPRTSHVDPRVLLGMSEPELQQ 65
           +A+LQ+ CS+PLARAVR P    +   R   T  +  S    ++   +VLLG+SE ELQQ
Sbjct: 2   LALLQN-CSMPLARAVRSPPRTHV---RPCFTAVAYASISSRANSQSQVLLGLSEKELQQ 57

Query: 66  LANDFGQQSYRGKQLHHLIYERKVKEIQDFSQLPQAFRHELEEAGWKIGRSPIYRTVTAA 125
           LA D  Q++YRGKQLHH +Y+RK++EIQDF+QLPQ FR+ LEE GWK+GRSPI++TVTAA
Sbjct: 58  LALDLNQETYRGKQLHHFLYQRKLREIQDFTQLPQGFRNTLEETGWKVGRSPIFQTVTAA 117

Query: 126 DGTVK 130
           DGTVK
Sbjct: 118 DGTVK 122


>Glyma02g41500.1 
          Length = 397

 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 81/125 (64%), Gaps = 23/125 (18%)

Query: 6   MAMLQHVCSVPLARAVRQPHSFTIVSSRKLRTTSSAVSPPRTSHVDPRVLLGMSEPELQQ 65
           +A+LQ+ CS+PLARAVR P                    PRT HV P     +    +  
Sbjct: 2   LALLQN-CSMPLARAVRLP--------------------PRT-HVRP-CFTAVGYASISP 38

Query: 66  LANDFGQQSYRGKQLHHLIYERKVKEIQDFSQLPQAFRHELEEAGWKIGRSPIYRTVTAA 125
            AN   Q +YRGKQLHH +Y+RK++EIQDF+QLPQ FR+ LEEAGWK+GRSPI+ TVTAA
Sbjct: 39  RANSQSQATYRGKQLHHFLYQRKLREIQDFTQLPQGFRNTLEEAGWKVGRSPIFETVTAA 98

Query: 126 DGTVK 130
           DGTVK
Sbjct: 99  DGTVK 103