Jatropha Genome Database

JcCB0341321.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0341321.20 - phase: 0 /partial
         (115 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g38000.1                                                       134   2e-32
Glyma18g48380.1                                                       129   5e-31

>Glyma09g38000.1 
          Length = 486

 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 82/116 (70%), Gaps = 3/116 (2%)

Query: 1   VVNISRDGIG-ADTSSYHSDFIRHIPLESIDPSLAIGFYCRDKDDFDEFCFLASKLADDS 59
           VVNIS D      TSSYH + +RHIPL+SIDPSLAIGFYCRDKDDFD+FC  ASKLA++S
Sbjct: 373 VVNISGDTQEPTSTSSYHCNIMRHIPLDSIDPSLAIGFYCRDKDDFDDFCSQASKLAEES 432

Query: 60  HGAPLFTVAHSHKLPKSVGRTDTSNDNSGVQEDDSLGVMPMNDAEAPVNEDDWQLL 115
           +GAPLFTV  S    K V   D S DN+G QE+D  G+   ND     NEDDWQLL
Sbjct: 433 NGAPLFTVTQSRSFSKQVTSNDVSGDNTGFQEEDFPGMDRGND--TGTNEDDWQLL 486


>Glyma18g48380.1 
          Length = 485

 Score =  129 bits (325), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/116 (62%), Positives = 81/116 (69%), Gaps = 4/116 (3%)

Query: 1   VVNISRDGIG-ADTSSYHSDFIRHIPLESIDPSLAIGFYCRDKDDFDEFCFLASKLADDS 59
           VVNIS D      TSSYH   +RHIPL+SIDPSLAIGFYCRDK DFD+FC  ASKLA++S
Sbjct: 373 VVNISGDTQEPTGTSSYHCKVMRHIPLDSIDPSLAIGFYCRDKGDFDDFCSQASKLAEES 432

Query: 60  HGAPLFTVAHSHKLPKSVGRTDTSNDNSGVQEDDSLGVMPMNDAEAPVNEDDWQLL 115
           +GAPLFTVA S    K V   D S DN+G QEDD  G+   ND     NEDDWQLL
Sbjct: 433 NGAPLFTVAKSRSFSKQV-SNDVSGDNTGFQEDDFPGMDCGND--TVTNEDDWQLL 485