Jatropha Genome Database

JcCB0340161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0340161.10 - phase: 0 
         (89 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g39720.1                                                       121   2e-28

>Glyma03g39720.1 
          Length = 1934

 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 61/65 (93%)

Query: 1  MANSRPDSKIFSVRIVSIDYYMAPPIPNTDICYSSFQGGKVNEVPVVRVYGSTPAGQKTC 60
          M++S+ +S+IFS+RIV+IDYYMAPPIP+ DICYSSF GGKVNEVPV+RVYG TPAGQKTC
Sbjct: 1  MSDSQSNSEIFSIRIVTIDYYMAPPIPDADICYSSFHGGKVNEVPVIRVYGPTPAGQKTC 60

Query: 61 LHIHR 65
          LHIHR
Sbjct: 61 LHIHR 65