Jatropha Genome Database

JcCB0339681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0339681.10 + phase: 0 /partial
         (180 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g31960.1                                                       125   2e-29
Glyma03g29240.1                                                       116   1e-26
Glyma02g33090.1                                                       113   9e-26

>Glyma19g31960.1 
          Length = 413

 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/137 (50%), Positives = 87/137 (63%), Gaps = 4/137 (2%)

Query: 46  AFQEEISKYHGLSSQWDSSFSRMPGSEYFISINYGAADDLALENDYVGSLCFERKIDLTS 105
            F   ++KY GLSS+WD S+ RM GS+YF S++YG  DD A E++YV   C ERKIDLTS
Sbjct: 153 GFSRGLAKYRGLSSRWDPSYGRMSGSDYFNSMHYG--DDSAAESEYVSGFCIERKIDLTS 210

Query: 106 YIKWWGSNETRQXXXXXXXXXXXXHGYAEDVG-ELKTSEWAVQPT-EYQMPCLGMPIDGK 163
           +IKWWGSN++R              G A D+  E+K  E  VQPT  YQMP LG P + K
Sbjct: 211 HIKWWGSNKSRHSDAGTRLSEEKKLGSAGDICIEIKQLEQKVQPTAPYQMPQLGRPQNEK 270

Query: 164 STKGYAFSALSILSKSA 180
             +  + SALSILS+SA
Sbjct: 271 KHRSSSVSALSILSQSA 287


>Glyma03g29240.1 
          Length = 420

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 73/114 (64%), Gaps = 2/114 (1%)

Query: 46  AFQEEISKYHGLSSQWDSSFSRMPGSEYFISINYGAADDLALENDYVGSLCFERKIDLTS 105
            F   ++KY GLSS+WD ++ RM GS+YF S++YGA DD A E++YV   C +RKIDLTS
Sbjct: 154 GFSRGLAKYRGLSSRWDPTYGRMSGSDYFNSMHYGAGDDSAAESEYVSGFCLDRKIDLTS 213

Query: 106 YIKWWGSNETRQXXXXXXXXXXXXHGYAEDV-GELKTSEWAVQPTE-YQMPCLG 157
           +IKWWGSN++R              G A DV  ELK  E  VQP E YQMP LG
Sbjct: 214 HIKWWGSNKSRHSDAGTRLSEEKKLGSAGDVCSELKQLEQKVQPMEPYQMPQLG 267


>Glyma02g33090.1 
          Length = 447

 Score =  113 bits (283), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/137 (47%), Positives = 84/137 (61%), Gaps = 4/137 (2%)

Query: 46  AFQEEISKYHGLSSQWDSSFSRMPGSEYFISINYGAADDLALENDYVGSLCFERKIDLTS 105
            F   +SKY GLSS+W+ ++ RM GS+YF S  YG  +D A E  Y+ S C ERKIDLTS
Sbjct: 186 GFSRGLSKYRGLSSRWNPTYGRMAGSDYFNSRYYG--EDSAAETKYLSSFCIERKIDLTS 243

Query: 106 YIKWWGSNETRQXXXXXXXXXXXXHGYAEDVG-ELKTSEWAVQPTE-YQMPCLGMPIDGK 163
           YIKWWGSN+++Q            HG+A D   E KT E  V P+E YQ+  LGMP +  
Sbjct: 244 YIKWWGSNKSQQPDSRVRFSDVRKHGFAGDFCIEHKTLEQNVHPSEPYQLLALGMPCERI 303

Query: 164 STKGYAFSALSILSKSA 180
             +  + SALSI+ +SA
Sbjct: 304 KHEHSSVSALSIVLQSA 320