Jatropha Genome Database

JcCB0338871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0338871.10 + phase: 0 /pseudo/partial
         (198 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g10210.1                                                       142   2e-34
Glyma04g10240.1                                                       129   3e-30
Glyma02g13650.1                                                        91   1e-18

>Glyma06g10210.1 
          Length = 691

 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 102/155 (65%), Gaps = 6/155 (3%)

Query: 9   KNEHEPAATTWQLKIIAE*VENFREL---SDCKIGKLTLARLLTAHDSL--MSCNELVHS 63
           +N H P  + W  + I E +   R+L    DCKIGKLTLARLL+A DSL         ++
Sbjct: 410 QNHHIPTTSNWCTEEIGEEITKVRDLLSEYDCKIGKLTLARLLSALDSLSFQYDGRKSNT 469

Query: 64  EEVLRLYSDSMKLDPSHSQYYKDKRCLVLFYLVFSGRESIVSRCFHYKDLTSPSHAYPMC 123
           EEVL+LY+D MKLDP+H  YYKD+  L+    + S R+S++  C +YKD T     Y +C
Sbjct: 470 EEVLQLYTDLMKLDPTHYLYYKDEHSLISLKRITSTRDSLLPYCHYYKDATETITGY-VC 528

Query: 124 LRLNKLSLSRIGSVEKLLWVQMPDLSQNELQSIEG 158
           LRL  LSLSR+GS+E LLWVQM DLS NELQS+EG
Sbjct: 529 LRLRNLSLSRMGSIENLLWVQMLDLSHNELQSVEG 563


>Glyma04g10240.1 
          Length = 707

 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/155 (52%), Positives = 105/155 (67%), Gaps = 6/155 (3%)

Query: 9   KNEHEPAATTWQLKIIAE*VENFREL---SDCKIGKLTLARLLTAHDSLMSCNE--LVHS 63
           +N H P  + W  + I E +  F++L    DCKIGKLTLARLLTA D L S ++    ++
Sbjct: 426 QNPHIPTTSNWCTEEIGEEITKFQDLLSEYDCKIGKLTLARLLTALDLLSSQHDGRKSNT 485

Query: 64  EEVLRLYSDSMKLDPSHSQYYKDKRCLVLFYLVFSGRESIVSRCFHYKDLTSPSHAYPMC 123
           EEVL+LY+D MKLDP+HS YYKD+  L+    + S R+S++  C +YKD T     Y  C
Sbjct: 486 EEVLQLYTDLMKLDPTHSLYYKDEHSLISLKRITSTRDSLLPYCHYYKDATETITGY-FC 544

Query: 124 LRLNKLSLSRIGSVEKLLWVQMPDLSQNELQSIEG 158
           L+L  LSLSR+GS+E LLWVQM DLS NELQSIEG
Sbjct: 545 LKLQNLSLSRMGSIENLLWVQMLDLSHNELQSIEG 579


>Glyma02g13650.1 
          Length = 666

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 99/173 (57%), Gaps = 31/173 (17%)

Query: 9   KNEHEPAATTWQLKIIAE*VENFREL---SDCKIGKLTLARLLTAHDSLMSCNEL--VHS 63
           +N H P +  W  + I + +  F++L    DCKIG+LTLARLLTA D L S ++    ++
Sbjct: 392 QNHHIPTSN-WCTEEIVQEITKFQDLLSEYDCKIGRLTLARLLTALDMLSSQHDGRKSNT 450

Query: 64  EEVLRLYSDSMKLDPSHSQYYKD-------------------KRCLVLFYLVFSGRESIV 104
           EEVL+LY+D MKLDP+HS YYKD                   K  LV+F ++F    +  
Sbjct: 451 EEVLQLYTDMMKLDPTHSIYYKDECSLISLKRLTEEKAFRKYKNLLVIFLIIFFPL-NWA 509

Query: 105 SRCFHYKDLTSPSHAYPMCLRLNKLSLSRIGSVEKLLWVQMPDLSQNELQSIE 157
             C     ++       +CLRL  LSLSRIGS++ LLWVQM DLS NEL+ IE
Sbjct: 510 HWCVFIFTISGN-----VCLRLQNLSLSRIGSIQNLLWVQMLDLSHNELRPIE 557