Jatropha Genome Database

JcCB0336251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0336251.10 - phase: 2 /partial
         (129 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g01170.3                                                       231   2e-61
Glyma04g01170.2                                                       230   3e-61
Glyma06g01210.1                                                       225   7e-60
Glyma04g01170.1                                                       223   6e-59

>Glyma04g01170.3 
          Length = 295

 Score =  231 bits (588), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 105/129 (81%), Positives = 121/129 (93%)

Query: 1   WVGIIGKRTTLNGEELSTRTCAKLSQAYLYTTSPHLFSGDAEEAFARLRSKVKMPLYGCD 60
           W+GI GKRT+LNG+E+STRTCA LSQAYLYTTSPHLFSGDAEEAF R+RSKVK+PLYGCD
Sbjct: 155 WIGIAGKRTSLNGQEISTRTCADLSQAYLYTTSPHLFSGDAEEAFIRVRSKVKIPLYGCD 214

Query: 61  CYAFALLASGYVDLAIESGVKPYDFLSLIPVIEGAGGIITDWKGGSLFWDASPNSRATSF 120
           CYA+ALL+SG+VDL +ESG+KPYDFL+LIPVIEGAGG+ITDWKG  LFW+ASP S ATSF
Sbjct: 215 CYAYALLSSGFVDLVVESGLKPYDFLALIPVIEGAGGVITDWKGDKLFWEASPLSIATSF 274

Query: 121 NILAAGDKQ 129
           N++AAGDKQ
Sbjct: 275 NVVAAGDKQ 283


>Glyma04g01170.2 
          Length = 207

 Score =  230 bits (587), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 105/129 (81%), Positives = 121/129 (93%)

Query: 1   WVGIIGKRTTLNGEELSTRTCAKLSQAYLYTTSPHLFSGDAEEAFARLRSKVKMPLYGCD 60
           W+GI GKRT+LNG+E+STRTCA LSQAYLYTTSPHLFSGDAEEAF R+RSKVK+PLYGCD
Sbjct: 67  WIGIAGKRTSLNGQEISTRTCADLSQAYLYTTSPHLFSGDAEEAFIRVRSKVKIPLYGCD 126

Query: 61  CYAFALLASGYVDLAIESGVKPYDFLSLIPVIEGAGGIITDWKGGSLFWDASPNSRATSF 120
           CYA+ALL+SG+VDL +ESG+KPYDFL+LIPVIEGAGG+ITDWKG  LFW+ASP S ATSF
Sbjct: 127 CYAYALLSSGFVDLVVESGLKPYDFLALIPVIEGAGGVITDWKGDKLFWEASPLSIATSF 186

Query: 121 NILAAGDKQ 129
           N++AAGDKQ
Sbjct: 187 NVVAAGDKQ 195


>Glyma06g01210.1 
          Length = 273

 Score =  225 bits (574), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 102/129 (79%), Positives = 118/129 (91%)

Query: 1   WVGIIGKRTTLNGEELSTRTCAKLSQAYLYTTSPHLFSGDAEEAFARLRSKVKMPLYGCD 60
           W+GI GKRTTLNG+E+STRTCA LSQAYLYTTSPHLFSGDAE+AF R+RSKVK+PLYGCD
Sbjct: 133 WIGITGKRTTLNGQEISTRTCADLSQAYLYTTSPHLFSGDAEKAFIRVRSKVKIPLYGCD 192

Query: 61  CYAFALLASGYVDLAIESGVKPYDFLSLIPVIEGAGGIITDWKGGSLFWDASPNSRATSF 120
           CYA+ALL+SG+VDL +ESG+KPYDFL+LIPVIEGAGG+ITDWKG  LFW+ SP S  T F
Sbjct: 193 CYAYALLSSGFVDLVVESGLKPYDFLALIPVIEGAGGVITDWKGDKLFWEVSPLSIPTCF 252

Query: 121 NILAAGDKQ 129
           N++AAGDKQ
Sbjct: 253 NVVAAGDKQ 261


>Glyma04g01170.1 
          Length = 303

 Score =  223 bits (567), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 121/137 (88%), Gaps = 8/137 (5%)

Query: 1   WVGIIGKRTTLNGEELSTRTCAKLSQAYLYTTSPHLFSGDAEEAFARLRSKVKMPLYGCD 60
           W+GI GKRT+LNG+E+STRTCA LSQAYLYTTSPHLFSGDAEEAF R+RSKVK+PLYGCD
Sbjct: 155 WIGIAGKRTSLNGQEISTRTCADLSQAYLYTTSPHLFSGDAEEAFIRVRSKVKIPLYGCD 214

Query: 61  CYAFALLASGYVDLAIESGVKPYDFLSLIPVIEGAGGIITDWKGGSLFWDASPNSRATS- 119
           CYA+ALL+SG+VDL +ESG+KPYDFL+LIPVIEGAGG+ITDWKG  LFW+ASP S AT+ 
Sbjct: 215 CYAYALLSSGFVDLVVESGLKPYDFLALIPVIEGAGGVITDWKGDKLFWEASPLSIATTL 274

Query: 120 -------FNILAAGDKQ 129
                  FN++AAGDKQ
Sbjct: 275 SYLHVAGFNVVAAGDKQ 291