Jatropha Genome Database

JcCB0334901.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0334901.20 - phase: 1 /partial
         (73 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g01230.1                                                       109   8e-25
Glyma07g04640.1                                                       107   4e-24
Glyma17g05530.4                                                        69   9e-13
Glyma17g05530.2                                                        69   9e-13
Glyma17g05530.1                                                        69   1e-12
Glyma17g05530.3                                                        69   1e-12
Glyma13g17200.3                                                        66   7e-12
Glyma13g17200.2                                                        66   1e-11
Glyma13g17200.1                                                        66   1e-11

>Glyma16g01230.1 
          Length = 416

 Score =  109 bits (272), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/73 (78%), Positives = 59/73 (80%), Gaps = 5/73 (6%)

Query: 1   AAPLPGLSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGF 60
           AA LPGLSATDLL YERQLAM KMGGVHALMHPQGQH LKQ          SQAIYDGGF
Sbjct: 349 AASLPGLSATDLLVYERQLAMSKMGGVHALMHPQGQHPLKQ-----AAIGASQAIYDGGF 403

Query: 61  QSVAAAQQLMYYQ 73
           Q+VAAAQQ+MYYQ
Sbjct: 404 QNVAAAQQMMYYQ 416


>Glyma07g04640.1 
          Length = 422

 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 59/73 (80%), Gaps = 4/73 (5%)

Query: 1   AAPLPGLSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGF 60
           AA LPGLSATDLL YERQLA+ KMGGVHALMHPQGQH LKQ          SQAIYDGGF
Sbjct: 354 AASLPGLSATDLLAYERQLAISKMGGVHALMHPQGQHHLKQ----AAAIGASQAIYDGGF 409

Query: 61  QSVAAAQQLMYYQ 73
           Q+VAAAQQ+MYYQ
Sbjct: 410 QNVAAAQQMMYYQ 422


>Glyma17g05530.4 
          Length = 411

 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 1   AAPLPGLSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGF 60
           +A + G S   L  YERQ+A+ KMGG HALMH QGQHALKQ            A YD  F
Sbjct: 342 SANVSGFSLASLAAYERQMALSKMGGAHALMHQQGQHALKQVAMGMGAPG---AGYDARF 398

Query: 61  QSVAAAQQLMYYQ 73
           Q+VA  Q LMYYQ
Sbjct: 399 QNVATTQHLMYYQ 411


>Glyma17g05530.2 
          Length = 411

 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 1   AAPLPGLSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGF 60
           +A + G S   L  YERQ+A+ KMGG HALMH QGQHALKQ            A YD  F
Sbjct: 342 SANVSGFSLASLAAYERQMALSKMGGAHALMHQQGQHALKQVAMGMGAPG---AGYDARF 398

Query: 61  QSVAAAQQLMYYQ 73
           Q+VA  Q LMYYQ
Sbjct: 399 QNVATTQHLMYYQ 411


>Glyma17g05530.1 
          Length = 413

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 1   AAPLPGLSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGF 60
           +A + G S   L  YERQ+A+ KMGG HALMH QGQHALKQ            A YD  F
Sbjct: 344 SANVSGFSLASLAAYERQMALSKMGGAHALMHQQGQHALKQVAMGMGAPG---AGYDARF 400

Query: 61  QSVAAAQQLMYYQ 73
           Q+VA  Q LMYYQ
Sbjct: 401 QNVATTQHLMYYQ 413


>Glyma17g05530.3 
          Length = 410

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 1   AAPLPGLSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGF 60
           +A + G S   L  YERQ+A+ KMGG HALMH QGQHALKQ            A YD  F
Sbjct: 341 SANVSGFSLASLAAYERQMALSKMGGAHALMHQQGQHALKQVAMGMGAPG---AGYDARF 397

Query: 61  QSVAAAQQLMYYQ 73
           Q+VA  Q LMYYQ
Sbjct: 398 QNVATTQHLMYYQ 410


>Glyma13g17200.3 
          Length = 381

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 1   AAPLPGLSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGF 60
           +A +PG S   L  YERQ+A+ KMGG H LMH QGQHALK               +D  F
Sbjct: 312 SANVPGFSLAGLAAYERQMALSKMGGAHTLMHQQGQHALKHVDMGMGATGTG---FDARF 368

Query: 61  QSVAAAQQLMYYQ 73
           Q+VA  Q L+YYQ
Sbjct: 369 QNVATTQHLVYYQ 381


>Glyma13g17200.2 
          Length = 410

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 1   AAPLPGLSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGF 60
           +A +PG S   L  YERQ+A+ KMGG H LMH QGQHALK               +D  F
Sbjct: 341 SANVPGFSLAGLAAYERQMALSKMGGAHTLMHQQGQHALKHVDMGMGATGTG---FDARF 397

Query: 61  QSVAAAQQLMYYQ 73
           Q+VA  Q L+YYQ
Sbjct: 398 QNVATTQHLVYYQ 410


>Glyma13g17200.1 
          Length = 410

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 1   AAPLPGLSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGF 60
           +A +PG S   L  YERQ+A+ KMGG H LMH QGQHALK               +D  F
Sbjct: 341 SANVPGFSLAGLAAYERQMALSKMGGAHTLMHQQGQHALKHVDMGMGATGTG---FDARF 397

Query: 61  QSVAAAQQLMYYQ 73
           Q+VA  Q L+YYQ
Sbjct: 398 QNVATTQHLVYYQ 410