Jatropha Genome Database

JcCB0333371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0333371.10 + phase: 0 /short
         (48 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g43240.1                                                        56   7e-09
Glyma07g18370.1                                                        56   9e-09
Glyma03g07540.1                                                        55   2e-08

>Glyma18g43240.1 
          Length = 451

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/29 (79%), Positives = 25/29 (86%)

Query: 17 SYFNLPPLDVSVAFPQATPASIFPPCSKN 45
          SYFN P LDVSVAFPQATPAS FPPC+ +
Sbjct: 3  SYFNFPALDVSVAFPQATPASTFPPCASD 31


>Glyma07g18370.1 
          Length = 460

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 26/29 (89%)

Query: 17 SYFNLPPLDVSVAFPQATPASIFPPCSKN 45
          SYFNLP LDVSVAFPQATPAS FPPC+ +
Sbjct: 3  SYFNLPALDVSVAFPQATPASNFPPCASD 31


>Glyma03g07540.1 
          Length = 437

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/34 (67%), Positives = 27/34 (79%)

Query: 12 ESAKSSYFNLPPLDVSVAFPQATPASIFPPCSKN 45
          ++A  SYF  PPLDVS AFPQATPAS FPPC+ +
Sbjct: 14 QNAMPSYFYSPPLDVSAAFPQATPASTFPPCASD 47