Jatropha Genome Database

JcCB0317451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317451.20 - phase: 0 /partial
         (73 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g02950.1                                                        88   2e-18
Glyma05g36610.1                                                        87   6e-18
Glyma18g38040.1                                                        53   6e-08

>Glyma08g02950.1 
          Length = 731

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 43/49 (87%)

Query: 1   RHKMTVLTPSYQAESYAPDDNRSDLRQFLYNTRWFRQFQKIDELASELD 49
           RHKMTVLTPSY AESY+P+DNR DLRQFLYN RW  QF+KIDEL SELD
Sbjct: 646 RHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVSELD 694


>Glyma05g36610.1 
          Length = 736

 Score = 86.7 bits (213), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 43/49 (87%)

Query: 1   RHKMTVLTPSYQAESYAPDDNRSDLRQFLYNTRWFRQFQKIDELASELD 49
           RHKMTVLTPSY AESY+P+DNR DLRQFLYN RW  QF+KIDEL +ELD
Sbjct: 651 RHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVNELD 699


>Glyma18g38040.1 
          Length = 284

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 33/46 (71%)

Query: 4   MTVLTPSYQAESYAPDDNRSDLRQFLYNTRWFRQFQKIDELASELD 49
           ++ L  S +  SY+P+DNR DL Q +YN RW  +F+KIDEL SELD
Sbjct: 208 LSTLPESKKKLSYSPEDNRFDLCQSVYNARWPCKFRKIDELVSELD 253