Jatropha Genome Database

JcCB0317451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317451.10 - phase: 0 /partial
         (278 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g02950.1                                                       513   e-146
Glyma05g36610.1                                                       509   e-144
Glyma13g08760.1                                                        52   5e-07

>Glyma08g02950.1 
          Length = 731

 Score =  513 bits (1322), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 234/278 (84%), Positives = 257/278 (92%)

Query: 1   MRLLKVATCNLNQWAMDFDCNLKNIKESISKAKQAGAVIRLGPELEITGYGCEDHFLELD 60
           MRLLKVA  NLNQWAMDFDCN K IKESI+KAK+AGA IRLGPELEI GYGCEDHFLELD
Sbjct: 1   MRLLKVAASNLNQWAMDFDCNAKQIKESIAKAKEAGAAIRLGPELEIPGYGCEDHFLELD 60

Query: 61  TVTHAWECLKEILLGDWTDGLLCSFGMPVIKGSERYNCQVLCFNRKILMIRPKMWLANDG 120
           TV H+WECLK++LLGDWTDG++CSFGMPVIKGSERYNCQV C NRKI+MIRPKM LANDG
Sbjct: 61  TVNHSWECLKDLLLGDWTDGIVCSFGMPVIKGSERYNCQVFCLNRKIIMIRPKMSLANDG 120

Query: 121 NYRELRWFTAWKQKDQLVDFQLPIEISKAINQDSVPFGYGFIQFLDTAVAAEVCEELFTP 180
           NYRELRWFTAWKQ+DQLVDFQLP E S+AI Q+SVPFGYGFI+F DTA+AAEVCEELFTP
Sbjct: 121 NYRELRWFTAWKQRDQLVDFQLPPEFSQAIGQNSVPFGYGFIKFQDTAIAAEVCEELFTP 180

Query: 181 IPPHAELALNGVEVFMNASGSHHQLRKLDLRIRAFIGATHTRGGVYMYSNQQGCDGARLY 240
            PPH+ELALNGVEVFMNASGSHHQLRKLD+R+RAFIGAT TRGGVY+YSN QGCDG+RLY
Sbjct: 181 TPPHSELALNGVEVFMNASGSHHQLRKLDVRLRAFIGATQTRGGVYIYSNHQGCDGSRLY 240

Query: 241 YDGCSCIAVNGEVVAQGSQFSLRDVEVVVAQVDLDAVC 278
           YDGC+ + VNG+VVAQGSQFSL+DVEVVVAQ+DLD V 
Sbjct: 241 YDGCASVVVNGDVVAQGSQFSLKDVEVVVAQIDLDVVA 278


>Glyma05g36610.1 
          Length = 736

 Score =  509 bits (1311), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 230/277 (83%), Positives = 259/277 (93%)

Query: 1   MRLLKVATCNLNQWAMDFDCNLKNIKESISKAKQAGAVIRLGPELEITGYGCEDHFLELD 60
           MR+LKVATCNLNQWAMDFDCN K IKESI+KAK+AGA IRLGPELEI GYGCEDHFLELD
Sbjct: 1   MRILKVATCNLNQWAMDFDCNAKQIKESIAKAKEAGAAIRLGPELEIPGYGCEDHFLELD 60

Query: 61  TVTHAWECLKEILLGDWTDGLLCSFGMPVIKGSERYNCQVLCFNRKILMIRPKMWLANDG 120
           TV H+WECLK++L+G+WTDG++CSFGMPVIK SERYNCQVLC NRKIL+IRPKM LANDG
Sbjct: 61  TVNHSWECLKDLLIGNWTDGIVCSFGMPVIKASERYNCQVLCLNRKILIIRPKMCLANDG 120

Query: 121 NYRELRWFTAWKQKDQLVDFQLPIEISKAINQDSVPFGYGFIQFLDTAVAAEVCEELFTP 180
           NYRELRWFTAWKQ+DQL+DFQLP +ISKAI Q+SVPFGYGF++F DTA+A E+CEELFTP
Sbjct: 121 NYRELRWFTAWKQRDQLIDFQLPPQISKAIGQNSVPFGYGFVKFQDTAIADEICEELFTP 180

Query: 181 IPPHAELALNGVEVFMNASGSHHQLRKLDLRIRAFIGATHTRGGVYMYSNQQGCDGARLY 240
            PPH+ELALNGVEVFMNASGSHHQLRKLD+ +RAFIGATHTRGGVY+YSN QGCDG+RLY
Sbjct: 181 TPPHSELALNGVEVFMNASGSHHQLRKLDVCLRAFIGATHTRGGVYIYSNHQGCDGSRLY 240

Query: 241 YDGCSCIAVNGEVVAQGSQFSLRDVEVVVAQVDLDAV 277
           YDGC+ + VNG+VVAQGSQFSL+DVEVVVAQ+DLD V
Sbjct: 241 YDGCASVVVNGDVVAQGSQFSLKDVEVVVAQIDLDVV 277


>Glyma13g08760.1 
          Length = 58

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/28 (78%), Positives = 24/28 (85%)

Query: 37 AVIRLGPELEITGYGCEDHFLELDTVTH 64
          A IRL P+LEI GYGCEDHFLEL+TV H
Sbjct: 30 AAIRLEPKLEIPGYGCEDHFLELNTVNH 57