Jatropha Genome Database

JcCB0317401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317401.10 + phase: 0 
         (112 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g24590.1                                                       105   1e-23
Glyma10g42530.1                                                       105   1e-23
Glyma03g35460.2                                                        73   8e-14
Glyma03g35460.1                                                        73   8e-14
Glyma19g38100.1                                                        50   5e-07

>Glyma20g24590.1 
          Length = 106

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)

Query: 1  METSSPAIFVNGETLQMYTGKKVRAVVQVIECDGGNTIVKSTDEHEWIVKELPLPSVPLL 60
          M+ S+P++FVN + +  + GKKVRAVVQV +CDGG T  KSTD+ +  +K   LP VPL+
Sbjct: 1  MDMSNPSVFVNAQLIPNFIGKKVRAVVQVSQCDGGVTTAKSTDDCQLTIK--GLPQVPLM 58

Query: 61 NYIEVIGVAETNKSIRAELCTDFGNTF 87
          NYIEVIG+AE+N SI AE+ TDFG+TF
Sbjct: 59 NYIEVIGIAESNSSIDAEIWTDFGSTF 85


>Glyma10g42530.1 
          Length = 145

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 66/87 (75%), Gaps = 2/87 (2%)

Query: 1   METSSPAIFVNGETLQMYTGKKVRAVVQVIECDGGNTIVKSTDEHEWIVKELPLPSVPLL 60
           M+TS+PA+FVN + +  + GKKVR VVQV +CDGG    KSTD+ +  +K   LP VPL+
Sbjct: 40  MDTSNPAVFVNAQLIPNFIGKKVRTVVQVSQCDGGVATAKSTDDCQLTIK--GLPQVPLM 97

Query: 61  NYIEVIGVAETNKSIRAELCTDFGNTF 87
           NYIEVIG+AE+N SI AE+ TDFG+TF
Sbjct: 98  NYIEVIGIAESNNSIDAEIWTDFGSTF 124


>Glyma03g35460.2 
          Length = 108

 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 62/95 (65%)

Query: 1  METSSPAIFVNGETLQMYTGKKVRAVVQVIECDGGNTIVKSTDEHEWIVKELPLPSVPLL 60
          M+ S+PA  VN E L  Y G++VR VVQV+  DGG  I KSTDE + +VK  P P+ PL 
Sbjct: 1  MDISNPAALVNAELLHFYVGRRVRIVVQVVRSDGGVVIGKSTDEKQLVVKGSPPPAAPLT 60

Query: 61 NYIEVIGVAETNKSIRAELCTDFGNTFGMNYWPAL 95
           ++EV G+  ++KSI AE+ T+FG+   M+ +  L
Sbjct: 61 TFVEVYGLVNSDKSIGAEIWTNFGDAIDMDSYNKL 95


>Glyma03g35460.1 
          Length = 108

 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 62/95 (65%)

Query: 1  METSSPAIFVNGETLQMYTGKKVRAVVQVIECDGGNTIVKSTDEHEWIVKELPLPSVPLL 60
          M+ S+PA  VN E L  Y G++VR VVQV+  DGG  I KSTDE + +VK  P P+ PL 
Sbjct: 1  MDISNPAALVNAELLHFYVGRRVRIVVQVVRSDGGVVIGKSTDEKQLVVKGSPPPAAPLT 60

Query: 61 NYIEVIGVAETNKSIRAELCTDFGNTFGMNYWPAL 95
           ++EV G+  ++KSI AE+ T+FG+   M+ +  L
Sbjct: 61 TFVEVYGLVNSDKSIGAEIWTNFGDAIDMDSYNKL 95


>Glyma19g38100.1 
          Length = 98

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 11/95 (11%)

Query: 1  METSSPAIFVNGETLQMYTGKKVRAVVQVIECDGGNTIVKSTDEHEWIVKELPLPSVPLL 60
          M+ S+PA  VN E L  Y G +VR V+QV+  D G  I KSTDE + +VK  P P  P  
Sbjct: 2  MDISNPAALVNAELLHFYVGSRVRVVMQVVRSD-GVVIGKSTDEKQLVVKGSP-PPAPHT 59

Query: 61 NYIEVIGVAETNKSIRAELCTDFGNTFGMNYWPAL 95
           Y+EV G         AE+ T+FG+   M+ +  L
Sbjct: 60 TYVEVYG---------AEIWTNFGDAIDMDSYNKL 85