Jatropha Genome Database

JcCB0316661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0316661.10 + phase: 0 /partial
         (55 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g36340.1                                                        62   2e-10
Glyma11g09100.1                                                        60   4e-10

>Glyma01g36340.1 
          Length = 553

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 2/57 (3%)

Query: 1   AQFDSISSTSMPDAKLDYGDVLDSAIKLFEKMYPNEEFFPETVSPEDS--ENDVGLS 55
           ++F+ ISST  PD  L+Y  +LD+  KLF +MYPNEEFFP+  SPED   E+D GL+
Sbjct: 494 SKFEFISSTPTPDGNLNYNALLDATEKLFNQMYPNEEFFPKATSPEDPTDEDDNGLT 550


>Glyma11g09100.1 
          Length = 551

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 2/57 (3%)

Query: 1   AQFDSISSTSMPDAKLDYGDVLDSAIKLFEKMYPNEEFFPETVSPEDS--ENDVGLS 55
            + + ISST  PD  L+Y D+LD+  KLF +MYP+EEFFP++ SPED   E+D GL+
Sbjct: 492 CKLEFISSTPTPDGNLNYDDLLDATRKLFNQMYPDEEFFPKSTSPEDPTDEDDNGLT 548