Jatropha Genome Database

JcCB0309941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0309941.10 + phase: 0 
         (151 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g41540.1                                                       149   1e-36
Glyma15g41540.2                                                       148   2e-36
Glyma08g17610.1                                                       147   5e-36
Glyma08g17600.1                                                       101   2e-22
Glyma15g41550.1                                                       101   3e-22

>Glyma15g41540.1 
          Length = 483

 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/97 (78%), Positives = 87/97 (89%)

Query: 50  RLGFAPADPLFSHHVASKIRSFGFGKASRAVVSMAKKSVGDLTGADLKGKRVFVRADLNV 109
           RLGFA ADPL + +VA+++ +   GK +R VVSMAKKSVG+L+ ADLKGK+VFVRADLNV
Sbjct: 46  RLGFAAADPLLAANVAARVAAVRGGKGARGVVSMAKKSVGELSAADLKGKKVFVRADLNV 105

Query: 110 PLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILSTHL 146
           PLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILS+HL
Sbjct: 106 PLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILSSHL 142


>Glyma15g41540.2 
          Length = 377

 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/97 (78%), Positives = 87/97 (89%)

Query: 50  RLGFAPADPLFSHHVASKIRSFGFGKASRAVVSMAKKSVGDLTGADLKGKRVFVRADLNV 109
           RLGFA ADPL + +VA+++ +   GK +R VVSMAKKSVG+L+ ADLKGK+VFVRADLNV
Sbjct: 46  RLGFAAADPLLAANVAARVAAVRGGKGARGVVSMAKKSVGELSAADLKGKKVFVRADLNV 105

Query: 110 PLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILSTHL 146
           PLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILS+HL
Sbjct: 106 PLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILSSHL 142


>Glyma08g17610.1 
          Length = 485

 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 92/108 (85%), Gaps = 1/108 (0%)

Query: 40  SAGLRAASIGRLGFAPADPLFSHHVASKIRSFGFG-KASRAVVSMAKKSVGDLTGADLKG 98
           ++ LRA  + RLGFA ADPL +  VA+++ +   G K +R VVSMAKKSVGDL+ ADLKG
Sbjct: 37  TSSLRARPLRRLGFAAADPLLAASVAARVAAVRGGGKGARGVVSMAKKSVGDLSAADLKG 96

Query: 99  KRVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILSTHL 146
           K+VFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILS+HL
Sbjct: 97  KKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILSSHL 144


>Glyma08g17600.1 
          Length = 401

 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 85  KKSVGDLTGADLKGKRVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILST 144
           K+SVG L   DLKGKRVFVR DLNVPLDDN NITDDTR+RAA+PTIK+L  +GAKVILS+
Sbjct: 4   KRSVGTLKEGDLKGKRVFVRVDLNVPLDDNLNITDDTRVRAAVPTIKYLTGHGAKVILSS 63

Query: 145 HL 146
           HL
Sbjct: 64  HL 65


>Glyma15g41550.1 
          Length = 401

 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 53/62 (85%)

Query: 85  KKSVGDLTGADLKGKRVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILST 144
           K+SVG L   DLKGKRVFVR DLNVPLDDN NITDDTR+RAA+PTIK+L   GAKVILS+
Sbjct: 4   KRSVGTLKEGDLKGKRVFVRVDLNVPLDDNLNITDDTRVRAAVPTIKYLTGYGAKVILSS 63

Query: 145 HL 146
           HL
Sbjct: 64  HL 65