Jatropha Genome Database

JcCB0305141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0305141.10 - phase: 0 /partial
         (50 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g03620.1                                                        76   9e-15
Glyma11g14340.1                                                        50   8e-07
Glyma12g06250.1                                                        48   2e-06

>Glyma18g03620.1 
          Length = 180

 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 43/48 (89%)

Query: 3  TSIHITALDGIINVNSLFTLAVFLGLAWNPSDPNNSLITDPTCAASSS 50
          TS+HITALD I+NVNSLFTLAVF+GL WNP+DP+NSL +DP CA +++
Sbjct: 9  TSLHITALDAIVNVNSLFTLAVFIGLTWNPNDPSNSLNSDPACAPTAA 56


>Glyma11g14340.1 
          Length = 190

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 32/49 (65%)

Query: 2  TTSIHITALDGIINVNSLFTLAVFLGLAWNPSDPNNSLITDPTCAASSS 50
          TT IHI ALDGI+NVNSLFTLA+FLG+    +        D  CAA +S
Sbjct: 12 TTRIHIMALDGIVNVNSLFTLALFLGITTTSTTNTLIGEDDAACAAGTS 60


>Glyma12g06250.1 
          Length = 182

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 4/51 (7%)

Query: 2  TTSIHITALDGIINVNSLFTLAVFLGLAWNPSDPNNSLITD--PTCAASSS 50
          TT IHI ALDGI+NVNSLFTLA+FLG+    +   N+LI D    CAA +S
Sbjct: 4  TTRIHIMALDGIVNVNSLFTLALFLGIT--TTSTTNTLIGDDNAACAAGAS 52