Jatropha Genome Database

JcCB0304921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0304921.10 + phase: 2 /partial
         (92 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g05020.1                                                       132   8e-32
Glyma01g40270.1                                                       113   5e-26
Glyma05g22680.1                                                       103   6e-23
Glyma17g11060.1                                                        62   1e-10
Glyma05g00860.1                                                        62   2e-10
Glyma09g05010.2                                                        57   4e-09
Glyma09g05010.1                                                        57   4e-09
Glyma03g37150.1                                                        57   5e-09
Glyma19g39760.1                                                        57   6e-09

>Glyma11g05020.1 
          Length = 452

 Score =  132 bits (332), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 68/82 (82%), Gaps = 1/82 (1%)

Query: 6   REPHLREAGNGKGSWRRPFITHFTGCQPCSGDHNKMYEGDSCWKGMVKALNFADNQVLRK 65
           RE +L++AGNGKGSWRRPFITHFTGCQPCSG +N MY  D CW GM KALNFADNQV+RK
Sbjct: 367 REEYLKDAGNGKGSWRRPFITHFTGCQPCSGKYNAMYSADDCWNGMQKALNFADNQVMRK 426

Query: 66  YGFVHPDLLDSKTVVETPFDYP 87
           +G++ PDLLD+  +   PFDYP
Sbjct: 427 FGYMRPDLLDN-AISPVPFDYP 447


>Glyma01g40270.1 
          Length = 449

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 61/82 (74%), Gaps = 4/82 (4%)

Query: 6   REPHLREAGNGKGSWRRPFITHFTGCQPCSGDHNKMYEGDSCWKGMVKALNFADNQVLRK 65
           RE +L++AGN KGSWRRPFITHFTGCQPCSG +N MY    CW  M  ALNFADNQV+RK
Sbjct: 370 REEYLKDAGNAKGSWRRPFITHFTGCQPCSGKYNAMYSAHDCWNAMHNALNFADNQVMRK 429

Query: 66  YGFVHPDLLDSKTVVETPFDYP 87
           +G+    LLD+  V   PFDYP
Sbjct: 430 FGY---SLLDN-AVSPLPFDYP 447


>Glyma05g22680.1 
          Length = 428

 Score =  103 bits (256), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 12  EAGNGKGSWRRPFITHFTGCQPCSGDHNKMYEGDSCWKGMVKALNFADNQVLRKYGFVHP 71
           E  N  G W+RPFITHFTGCQPC+G HN  Y+   CW  M +ALNFADNQVLR YG++  
Sbjct: 351 EYLNDVGEWKRPFITHFTGCQPCNGHHNPAYDAMDCWNSMERALNFADNQVLRVYGYMRK 410

Query: 72  DLLDSKTVVETPFDYP 87
           DLL+ K +   PFDYP
Sbjct: 411 DLLN-KAISPIPFDYP 425


>Glyma17g11060.1 
          Length = 447

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 16  GKGSWRRPFITHFTGCQPCS--GDHNKMYEGDSCWKGMVKALNFADNQVLRKYGFVHPDL 73
           G G  R PF+THF GC+PC   GD    Y  + C   M +A NFADNQVL+ YGF H  L
Sbjct: 356 GLGDERWPFVTHFVGCKPCGSYGD----YPVERCLSSMERAFNFADNQVLKLYGFRHRGL 411

Query: 74  LDSKT 78
           L  K 
Sbjct: 412 LSPKI 416


>Glyma05g00860.1 
          Length = 447

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 16  GKGSWRRPFITHFTGCQPCS--GDHNKMYEGDSCWKGMVKALNFADNQVLRKYGFVHPDL 73
           G G  R PF+THF GC+PC   GD    Y  + C   M +A NFADNQVL+ YGF H  L
Sbjct: 356 GLGDERWPFVTHFVGCKPCGSYGD----YPVERCLSSMERAFNFADNQVLKLYGFRHRGL 411

Query: 74  LDSKT 78
           L  K 
Sbjct: 412 LSPKI 416


>Glyma09g05010.2 
          Length = 450

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 6/60 (10%)

Query: 16  GKGSWRRPFITHFTGCQPCS--GDHNKMYEGDSCWKGMVKALNFADNQVLRKYGFVHPDL 73
           G G  R P +THF GC+PC   GD    Y  + C K M +A NF DNQ+L+ YGF H  L
Sbjct: 358 GLGDHRWPLVTHFVGCKPCGKFGD----YPVERCLKQMDRAYNFGDNQILQMYGFTHKSL 413


>Glyma09g05010.1 
          Length = 450

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 6/60 (10%)

Query: 16  GKGSWRRPFITHFTGCQPCS--GDHNKMYEGDSCWKGMVKALNFADNQVLRKYGFVHPDL 73
           G G  R P +THF GC+PC   GD    Y  + C K M +A NF DNQ+L+ YGF H  L
Sbjct: 358 GLGDHRWPLVTHFVGCKPCGKFGD----YPVERCLKQMDRAYNFGDNQILQMYGFTHKSL 413


>Glyma03g37150.1 
          Length = 430

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 6/60 (10%)

Query: 16  GKGSWRRPFITHFTGCQPCS--GDHNKMYEGDSCWKGMVKALNFADNQVLRKYGFVHPDL 73
           G G  R P +THF GC+PC   GD    Y  + C K M +A NF DNQ+L+ YGF H  L
Sbjct: 353 GFGDHRWPLVTHFVGCKPCGKFGD----YPVERCLKQMDRAFNFGDNQILQIYGFTHESL 408


>Glyma19g39760.1 
          Length = 455

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 16  GKGSWRRPFITHFTGCQPCS--GDHNKMYEGDSCWKGMVKALNFADNQVLRKYGFVHPDL 73
           G G  R P +THF GC+PC   GD    Y  + C K M +A NF DNQ+L  YGF H  L
Sbjct: 365 GFGDHRWPLVTHFVGCKPCGKFGD----YPVERCLKQMDRAFNFGDNQILHIYGFTHKSL 420