Jatropha Genome Database

JcCB0304081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0304081.10 + phase: 0 
         (135 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g01460.1                                                       183   5e-47
Glyma05g38160.1                                                       182   8e-47
Glyma11g07540.1                                                        64   4e-11
Glyma01g37780.1                                                        63   1e-10
Glyma01g37780.2                                                        62   1e-10
Glyma06g03380.1                                                        59   2e-09
Glyma04g03310.3                                                        58   2e-09
Glyma04g03310.1                                                        58   2e-09
Glyma04g03310.2                                                        57   6e-09

>Glyma08g01460.1 
          Length = 253

 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 93/127 (73%), Positives = 103/127 (81%), Gaps = 8/127 (6%)

Query: 5   LARISRKALTST-------ISPQRHLLNRSFSAEASTKSITPSPDRVKWDYRGQRQIIPL 57
           LAR S++AL S        + PQ     R+FS +A T SITPS DRVKWDYRGQR+IIPL
Sbjct: 4   LARFSKRALRSAHALARPHVQPQLLTAERAFSTDAPT-SITPSADRVKWDYRGQRKIIPL 62

Query: 58  GQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQERCVVHA 117
           GQWLPKVAVDAYVAPNVVLAGQVTV DGASVW G VLRGDLNKI++GFCSNVQER V+HA
Sbjct: 63  GQWLPKVAVDAYVAPNVVLAGQVTVWDGASVWPGCVLRGDLNKISIGFCSNVQERSVLHA 122

Query: 118 AWNSPTG 124
           AW+SPTG
Sbjct: 123 AWSSPTG 129


>Glyma05g38160.1 
          Length = 253

 Score =  182 bits (462), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 103/127 (81%), Gaps = 8/127 (6%)

Query: 5   LARISRKALTST-------ISPQRHLLNRSFSAEASTKSITPSPDRVKWDYRGQRQIIPL 57
           LA  S++AL S        + PQ     R+F+ EA+ KSI+PS DRVKWDYRGQR+IIPL
Sbjct: 4   LAHFSKRALRSAHALARHHVQPQLLAAERAFATEAA-KSISPSADRVKWDYRGQRKIIPL 62

Query: 58  GQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQERCVVHA 117
           GQWLPKVAVDAYVAPNVVLAGQVTV DGASVW G VLRGDLNKI+VGFCSNVQER V+HA
Sbjct: 63  GQWLPKVAVDAYVAPNVVLAGQVTVWDGASVWPGCVLRGDLNKISVGFCSNVQERSVIHA 122

Query: 118 AWNSPTG 124
           AW+SPTG
Sbjct: 123 AWSSPTG 129


>Glyma11g07540.1 
          Length = 270

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 11/112 (9%)

Query: 24  LNRSFSA-----EASTKSITPSPDRVKWDYRGQRQI------IPLGQWLPKVAVDAYVAP 72
           L R+F A       + ++I     R++ +Y  Q Q+      + L    P V  DA+VAP
Sbjct: 4   LGRAFYAVGFWIRETGQAIDRLGSRLQGNYLFQEQLSRHRPLMNLFDKAPSVHRDAFVAP 63

Query: 73  NVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQERCVVHAAWNSPTG 124
           +  L G V V   +S+W G VLRGD+N IT+G  +N+Q+  +VH A ++ +G
Sbjct: 64  SASLLGDVHVGPASSIWYGCVLRGDVNSITIGSGTNIQDNSLVHVAKSNLSG 115


>Glyma01g37780.1 
          Length = 270

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 6/88 (6%)

Query: 43  RVKWDYRGQRQI------IPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRG 96
           R++ +Y  Q Q+      + L    P V  DA+VAP+  L G V V   +S+W G VLRG
Sbjct: 28  RLQGNYLFQEQLSRHRPLMNLFDKAPSVHRDAFVAPSASLLGDVHVGPASSIWYGCVLRG 87

Query: 97  DLNKITVGFCSNVQERCVVHAAWNSPTG 124
           D+N IT+G  +N+Q+  +VH A ++ +G
Sbjct: 88  DVNSITIGSGTNIQDNSLVHVAKSNLSG 115


>Glyma01g37780.2 
          Length = 184

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 11/112 (9%)

Query: 24  LNRSFSA-----EASTKSITPSPDRVKWDYRGQRQI------IPLGQWLPKVAVDAYVAP 72
           L R F A       + ++I     R++ +Y  Q Q+      + L    P V  DA+VAP
Sbjct: 4   LGRVFYAVGFWIRETGQAIDRLGSRLQGNYLFQEQLSRHRPLMNLFDKAPSVHRDAFVAP 63

Query: 73  NVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQERCVVHAAWNSPTG 124
           +  L G V V   +S+W G VLRGD+N IT+G  +N+Q+  +VH A ++ +G
Sbjct: 64  SASLLGDVHVGPASSIWYGCVLRGDVNSITIGSGTNIQDNSLVHVAKSNLSG 115


>Glyma06g03380.1 
          Length = 273

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 45/74 (60%)

Query: 51  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQ 110
            R ++ +    P V  D +VAP+  + G V +  G+S+W G VLRGD+N I VG  +N+Q
Sbjct: 42  HRTLMDIFDKAPVVDEDVFVAPSASVIGDVQLGRGSSIWYGVVLRGDVNSIRVGTGTNIQ 101

Query: 111 ERCVVHAAWNSPTG 124
           +  +VH A ++ +G
Sbjct: 102 DNSLVHVAKSNLSG 115


>Glyma04g03310.3 
          Length = 276

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 45/74 (60%)

Query: 51  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQ 110
            R ++ +    P V  D +VAP+  + G V +  G+S+W G VLRGD+N I VG  +N+Q
Sbjct: 42  HRTLMNIFDKAPVVDKDVFVAPSASVIGDVQLGRGSSIWYGVVLRGDVNSIRVGNGTNIQ 101

Query: 111 ERCVVHAAWNSPTG 124
           +  +VH A ++ +G
Sbjct: 102 DNSLVHVAKSNLSG 115


>Glyma04g03310.1 
          Length = 276

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 45/74 (60%)

Query: 51  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQ 110
            R ++ +    P V  D +VAP+  + G V +  G+S+W G VLRGD+N I VG  +N+Q
Sbjct: 42  HRTLMNIFDKAPVVDKDVFVAPSASVIGDVQLGRGSSIWYGVVLRGDVNSIRVGNGTNIQ 101

Query: 111 ERCVVHAAWNSPTG 124
           +  +VH A ++ +G
Sbjct: 102 DNSLVHVAKSNLSG 115


>Glyma04g03310.2 
          Length = 231

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 62  PKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQERCVVHAAWNS 121
           P V  D +VAP+  + G V +  G+S+W G VLRGD+N I VG  +N+Q+  +VH A ++
Sbjct: 8   PVVDKDVFVAPSASVIGDVQLGRGSSIWYGVVLRGDVNSIRVGNGTNIQDNSLVHVAKSN 67

Query: 122 PTG 124
            +G
Sbjct: 68  LSG 70