Jatropha Genome Database

JcCB0301651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0301651.10 + phase: 0 /partial
         (212 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g30440.1                                                       214   6e-56
Glyma12g33700.1                                                       160   1e-39
Glyma13g36790.1                                                       159   2e-39

>Glyma13g30440.1 
          Length = 511

 Score =  214 bits (544), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 125/217 (57%), Positives = 146/217 (67%), Gaps = 8/217 (3%)

Query: 1   MQSPVRFSSCRGVAFEIKPHSNPFTLSPVPEEPTXXXXXXXXXXXXXXXKVFPSTTIQRS 60
           M++P RFSSCRGVAFE+KPH++PF +   P   +               +VFPS++ QRS
Sbjct: 1   METPTRFSSCRGVAFEVKPHADPFAIVTTPTSQSLSNSKRIWPLDTS--RVFPSSS-QRS 57

Query: 61  VSRASSHFCXXXXXXXXXXX----XXXXXXXGKQEEIKEFTPNPL-PSASKREQAPKPAR 115
            S  SSHFC                       KQ ++     N +  S SK EQ  KP+R
Sbjct: 58  FSSVSSHFCDLDDDDEEEDAPESIFEKTYDVEKQNQLAAVHNNGIVGSTSKSEQPSKPSR 117

Query: 116 KPESRLSVILLDQGLFTVYKRLFVVSLTLNITALVLAATSHFPYARNRAALFSIANILAL 175
           K ESRLSVILLDQGLFTVYKRLF++ LT N+T LVLAAT +FPYARNRAALFSI NILAL
Sbjct: 118 KNESRLSVILLDQGLFTVYKRLFMLCLTFNVTGLVLAATGNFPYARNRAALFSIGNILAL 177

Query: 176 TLCRSEAFLRVVFWLAVKVLGRSWIPLPIKTATTSLL 212
           TLCRSEAFLR+VFWLAVK LGRSW+PL +KTATTSLL
Sbjct: 178 TLCRSEAFLRLVFWLAVKTLGRSWVPLFLKTATTSLL 214


>Glyma12g33700.1 
          Length = 526

 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/209 (46%), Positives = 122/209 (58%), Gaps = 9/209 (4%)

Query: 6   RFSSCRGVAFEIKPH-SNPFTLSPVPEEPTXXXXXXXXXXXXXXXKVFPS-TTIQRSVSR 63
           RFSSCRGVAFEI P+ SNPF +    ++                 KV P    I  + SR
Sbjct: 1   RFSSCRGVAFEIDPNRSNPFAIGSPTKQEGIGTWLWLPWTRNSSFKVLPQPHNISPTRSR 60

Query: 64  ASSHFCXXXXXXXXXXXXXXXXXXGKQEEIKEFTPNPLPSASKREQAPKPARKPESRLSV 123
            SSHFC                   + ++I++  P+       ++  PK      SRLS+
Sbjct: 61  VSSHFCDIDIDASDVEVEFI----AEVQDIEK--PDKANGVKVQKLLPKTDPPRRSRLSI 114

Query: 124 ILLDQGLFTVYKRLFVVSLTLNITALVLAATSHFPYARNRAALFSIANILALTLCRSEAF 183
           ILLDQG FT YK LF+V + LN+ AL L+A  +FPYA+ RAALFSI NILALTLCRSEA 
Sbjct: 115 ILLDQG-FTFYKGLFLVCMALNVVALALSAAGYFPYAKTRAALFSIGNILALTLCRSEAV 173

Query: 184 LRVVFWLAVKVLGRSWIPLPIKTATTSLL 212
           LRV+FWLAVK++GR  + L IKTATTS L
Sbjct: 174 LRVIFWLAVKIIGRPCVSLRIKTATTSFL 202


>Glyma13g36790.1 
          Length = 519

 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/209 (47%), Positives = 122/209 (58%), Gaps = 9/209 (4%)

Query: 6   RFSSCRGVAFEIKPH-SNPFTLSPVPEEPTXXXXXXXXXXXXXXXKVFPS-TTIQRSVSR 63
           RFSSCRGVAFEI P+ SNPF +   P++                 KV P   TI  + SR
Sbjct: 13  RFSSCRGVAFEINPNRSNPFAIGSPPKQERIGTWLWLPWTRNSSFKVLPQPHTISPTRSR 72

Query: 64  ASSHFCXXXXXXXXXXXXXXXXXXGKQEEIKEFTPNPLPSASKREQAPKPARKPESRLSV 123
           ASSHFC                   + ++I++  P+       ++  PK      SRLS+
Sbjct: 73  ASSHFCDIDIDASDFEVEFI----AEVQDIEK--PDKANVVKVQKLLPKSDPPRRSRLSI 126

Query: 124 ILLDQGLFTVYKRLFVVSLTLNITALVLAATSHFPYARNRAALFSIANILALTLCRSEAF 183
           ILLDQG FT YK LF+V + LN+ AL L+A   FPYA+ RAALFSI NILALTLCRSEA 
Sbjct: 127 ILLDQG-FTCYKGLFLVCMALNVVALALSAAGCFPYAKTRAALFSIGNILALTLCRSEAA 185

Query: 184 LRVVFWLAVKVLGRSWIPLPIKTATTSLL 212
           LRV+FWL V+ LGR  + L IKTATTS L
Sbjct: 186 LRVIFWLTVQTLGRPCVSLRIKTATTSFL 214