Jatropha Genome Database

JcCB0298051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0298051.10 + phase: 1 /partial
         (129 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g44900.1                                                       192   6e-50
Glyma09g40920.1                                                       134   2e-32

>Glyma18g44900.1 
          Length = 398

 Score =  192 bits (489), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 89/109 (81%), Positives = 101/109 (92%)

Query: 1   SLDLAVVLPLYVAGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWITGFGIAC 60
           SLD ++VLPLY +GVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWITGFGIAC
Sbjct: 271 SLDPSIVLPLYASGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWITGFGIAC 330

Query: 61  ISSLALSGVSADLGWPFYAFLAAASGHLTWQIWTVDLSSRADCNKKYVN 109
           +  LA+SG +A++GWP+YA LA ASGHL WQIWTVDLSSRADCN+K+V+
Sbjct: 331 LGGLAVSGFNAEIGWPYYASLAVASGHLGWQIWTVDLSSRADCNRKFVS 379


>Glyma09g40920.1 
          Length = 441

 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 80/110 (72%), Gaps = 15/110 (13%)

Query: 1   SLDLAVVLPLYVAGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWITGFGIAC 60
           SLD ++VLPLY +GVFWTLVYDTIYAHQDKEDD KVG              WITGF IAC
Sbjct: 325 SLDPSIVLPLYASGVFWTLVYDTIYAHQDKEDDQKVG--------------WITGFEIAC 370

Query: 61  ISSLALSGVSADL-GWPFYAFLAAASGHLTWQIWTVDLSSRADCNKKYVN 109
           +  LA+SG +A++ GW +YA LA  SGHL WQ W VDLSSR DCN+K+V+
Sbjct: 371 LGGLAVSGFNAEIAGWLYYASLAVVSGHLGWQTWAVDLSSRTDCNRKFVS 420