Jatropha Genome Database

JcCB0296601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0296601.10 + phase: 2 /pseudo/partial
         (171 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g08640.1                                                        53   2e-07
Glyma06g39720.1                                                        49   2e-06
Glyma15g21140.1                                                        49   3e-06
Glyma02g03010.1                                                        48   5e-06

>Glyma01g08640.1 
          Length = 947

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 43  IYAVLDHAEEKQTTNPAVKIWLSKLQDLAYXXXXXXXXXXXXXSLSKLKARSQDIMGAEC 102
           I A L+ AEEKQ ++ A+K WL KL+D A+             +   LK    +I     
Sbjct: 41  IKATLEDAEEKQFSDRAIKDWLQKLKDAAH----ILDEILDEYATEALKLEYHEIKCGLS 96

Query: 103 NPTPSC--TCLNPNVVLLNLKTRSKLKEITTRLKTIAKEKNDLDLRTNIGRRSNRMNERV 160
           N   S   +  +PN V+   K   K+K I+ RL+ IA+E+    L   +  RS  +  R 
Sbjct: 97  NKVQSSCLSAFHPNHVVFRYKIAKKMKRISERLERIAEERIKFHLTEMVSERSGIIEWR- 155

Query: 161 PTTSLMKE 168
            T+S + E
Sbjct: 156 QTSSFITE 163


>Glyma06g39720.1 
          Length = 744

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 17/144 (11%)

Query: 36  VNLTLLEIYAVLDHAEEKQTTNPAVKIWLSKLQDLAYXXXXXXXXXXXXXSLSKLKARSQ 95
           + + L  I A+ D AE+KQ  +P V+ WL K++++               S  +++A S 
Sbjct: 1   MEIKLHSIQALADDAEQKQFRDPHVRNWLLKVKNVVLDAEDVLDEIQYEISKCQVEAES- 59

Query: 96  DIMGAECNPTPSCTCLNPNVV------LLNLKTRSKLKEITTRLKTIAKEKNDLDLRTNI 149
                E   +  C+C  PN          N + +S+++++   L+ ++ +K DL L+   
Sbjct: 60  -----ESQTSTGCSCKVPNFFKTSHASSFNKEIKSRIEQVLDSLEFLSSQKGDLGLKNAS 114

Query: 150 G-----RRSNRMNERVPTTSLMKE 168
           G        + +++++P+TSL+ E
Sbjct: 115 GVDYGSGSGSEVSQKLPSTSLLSE 138


>Glyma15g21140.1 
          Length = 884

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 12/131 (9%)

Query: 43  IYAVLDHAEEKQTTNPAVKIWLSKLQDLAYXXXXXXXXXXXXXSLSKLKARSQDIMGAEC 102
           I A L+ AEEKQ +N  +K WL KL+  A+                  +    +  G +C
Sbjct: 41  IKATLEDAEEKQFSNKDIKDWLGKLKHAAHNLDDIIDE-------CAYEVMRLEYEGVKC 93

Query: 103 NPTP--SCTCL---NPNVVLLNLKTRSKLKEITTRLKTIAKEKNDLDLRTNIGRRSNRMN 157
            P     C CL   +P  V+ + K   K+K I+ RL+ I +E+    L   +  R  R+ 
Sbjct: 94  GPLNKLQCYCLSSFHPKRVVFHYKISKKMKRISERLREIDEERTKFPLIEMVHERRRRVL 153

Query: 158 ERVPTTSLMKE 168
           E   T S + E
Sbjct: 154 EWRQTVSRVTE 164


>Glyma02g03010.1 
          Length = 829

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 9/129 (6%)

Query: 43  IYAVLDHAEEKQTTNPAVKIWLSKLQDLAYXXXXXXXXXXXXXSLSKLKARSQDIMGAEC 102
           I A L  A EKQ ++ A+K WL KL++ AY             +   L    Q +   + 
Sbjct: 11  IKATLQDAVEKQFSDEAIKDWLPKLKEAAY----ELDDILDECAYEALGLEYQGVKSGQS 66

Query: 103 NPTPSCTCL---NPNVVLLNLKTRSKLKEITTRLKTIAKEKNDLDLRTNIGRRSNRMNER 159
           +    C+CL   +P  V+   K   ++K IT RL  IA+E+    L T       R+ E 
Sbjct: 67  HKV-QCSCLSSFHPKHVVFRYKIAKRMKRITERLDEIAEERQKFHL-TKTALERTRIIEW 124

Query: 160 VPTTSLMKE 168
             T+S++ E
Sbjct: 125 RQTSSIISE 133