Jatropha Genome Database

JcCB0295761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0295761.10 - phase: 2 /partial
         (172 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g02510.1                                                       231   3e-61
Glyma11g10190.1                                                       231   4e-61
Glyma12g02510.2                                                       213   6e-56
Glyma08g41810.1                                                        56   2e-08
Glyma08g10340.1                                                        54   1e-07
Glyma05g27360.1                                                        52   2e-07

>Glyma12g02510.1 
          Length = 513

 Score =  231 bits (589), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 111/133 (83%), Positives = 118/133 (88%), Gaps = 1/133 (0%)

Query: 3   VLDINSFVSGSFSHGFTYSGHPVSCAVAIEALKIYKYGENIPEQVSKIAPKFQDGLKAFS 62
           V+   S   GSFSHGFTYSGHP +CAVAIEALKIYK   NI +QV+KIAP+FQDG+KAFS
Sbjct: 359 VIHAQSNKLGSFSHGFTYSGHPAACAVAIEALKIYKE-RNIVDQVNKIAPRFQDGIKAFS 417

Query: 63  DSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEWGVGAYFGAQCEKHGMLVRVAGDNIMMS 122
           DSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEWGVGAYFGAQCEKHGMLVRVAGDNIMMS
Sbjct: 418 DSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEWGVGAYFGAQCEKHGMLVRVAGDNIMMS 477

Query: 123 PPLTISPEEVDEV 135
           PP  IS  EVDE+
Sbjct: 478 PPYIISQGEVDEL 490


>Glyma11g10190.1 
          Length = 513

 Score =  231 bits (588), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 108/124 (87%), Positives = 116/124 (93%), Gaps = 1/124 (0%)

Query: 12  GSFSHGFTYSGHPVSCAVAIEALKIYKYGENIPEQVSKIAPKFQDGLKAFSDSPIIGEIR 71
           GSFSHGFTYSGHP +CAVAIEALKIYK   NI +QV+KIAP+FQDG+KAFSDSPIIGEIR
Sbjct: 368 GSFSHGFTYSGHPAACAVAIEALKIYK-ERNIVDQVNKIAPRFQDGIKAFSDSPIIGEIR 426

Query: 72  GTGLILGTEFTDNKSPNDPFPPEWGVGAYFGAQCEKHGMLVRVAGDNIMMSPPLTISPEE 131
           GTGLILGTEFTDNKSPNDPFPPEWG+GAYFGAQCEKHGMLVRVAGDNIMMSPP  ISP E
Sbjct: 427 GTGLILGTEFTDNKSPNDPFPPEWGIGAYFGAQCEKHGMLVRVAGDNIMMSPPYIISPGE 486

Query: 132 VDEV 135
           V+E+
Sbjct: 487 VEEL 490


>Glyma12g02510.2 
          Length = 490

 Score =  213 bits (543), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 111/167 (66%), Positives = 118/167 (70%), Gaps = 35/167 (20%)

Query: 3   VLDINSFVSGSFSHGFTYSGHPVSCAVAIEALKIYKYGENIPEQVSKIAPKFQDGLKAFS 62
           V+   S   GSFSHGFTYSGHP +CAVAIEALKIYK   NI +QV+KIAP+FQDG+KAFS
Sbjct: 302 VIHAQSNKLGSFSHGFTYSGHPAACAVAIEALKIYKE-RNIVDQVNKIAPRFQDGIKAFS 360

Query: 63  DSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEW--------------------------- 95
           DSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEW                           
Sbjct: 361 DSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEWGNLLPSQQKLKKLDQNTSRFGFFSVRL 420

Query: 96  -------GVGAYFGAQCEKHGMLVRVAGDNIMMSPPLTISPEEVDEV 135
                  GVGAYFGAQCEKHGMLVRVAGDNIMMSPP  IS  EVDE+
Sbjct: 421 GFNIPLFGVGAYFGAQCEKHGMLVRVAGDNIMMSPPYIISQGEVDEL 467


>Glyma08g41810.1 
          Length = 581

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/27 (85%), Positives = 25/27 (92%)

Query: 12  GSFSHGFTYSGHPVSCAVAIEALKIYK 38
           GSFSHG+TYSGHP +CAVAIEAL IYK
Sbjct: 496 GSFSHGYTYSGHPAACAVAIEALNIYK 522


>Glyma08g10340.1 
          Length = 467

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 28/153 (18%)

Query: 15  SHGFTYSGHPVSCAVAIEALKIYK----------YGENIPEQVSKIAPKFQDGLKAFSDS 64
            HG T+ G+P++ AVAI +L++ K           GE +  Q+ KI  ++ D +K     
Sbjct: 313 QHGSTFGGNPMASAVAIASLEVIKNERLVERSAQMGEELTGQLLKIQQQYPDYVK----- 367

Query: 65  PIIGEIRGTGLILGTEFTDNKSPNDPFPPEWGVGAYFGAQCEKHGMLVRVAGDNIM-MSP 123
               E+RG GL +G EF   K     FP     G     + +  G+L +   D I+  +P
Sbjct: 368 ----EVRGRGLFIGVEFNSKKL----FPVS---GYELCKKLKYRGVLAKPTHDAIIRFTP 416

Query: 124 PLTISPEEVDE-VRFVAILFIIALLRITKRKSV 155
           PL IS +E+ +  + +A +  I L ++ K K +
Sbjct: 417 PLCISVDEIQQGSKALADVLEIDLPKLQKTKPI 449


>Glyma05g27360.1 
          Length = 469

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 28/151 (18%)

Query: 15  SHGFTYSGHPVSCAVAIEALKIYK----------YGENIPEQVSKIAPKFQDGLKAFSDS 64
            HG T+ G+P++ AVAI +L++ K           GE +  Q+ KI  ++ D +K     
Sbjct: 315 QHGSTFGGNPLASAVAIASLEVIKNERLVERSAQMGEELAGQLLKIQQQYPDYVK----- 369

Query: 65  PIIGEIRGTGLILGTEFTDNKSPNDPFPPEWGVGAYFGAQCEKHGMLVRVAGDNIM-MSP 123
               E+RG GL +G EF       + FP     G     + +  G+L +   D I+  +P
Sbjct: 370 ----EVRGRGLFIGVEFNS----KNLFPVS---GYELCKKLKYRGVLAKPTHDTIIRFTP 418

Query: 124 PLTISPEEVDE-VRFVAILFIIALLRITKRK 153
           PL IS +E+ +  + +A +  I L ++ K K
Sbjct: 419 PLCISLDEIQQGSKVLADVLEIDLPKLQKTK 449