Jatropha Genome Database

JcCB0294151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0294151.10 + phase: 0 /partial
         (230 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g42830.1                                                       225   3e-59
Glyma20g24170.1                                                       223   1e-58
Glyma08g39470.1                                                       120   1e-27
Glyma18g19110.1                                                        83   2e-16

>Glyma10g42830.1 
          Length = 571

 Score =  225 bits (574), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 103/159 (64%), Positives = 128/159 (80%), Gaps = 3/159 (1%)

Query: 1   MNV-FQSLIERLRPLVGLKGWDYCVLWIFSDDQRFLEWMECCCGGTEDIKNGGDEVQFPL 59
           MN+  Q L+ERLRPLVGL GWDYC+ W  S+DQRFLEW+ CCC GTE  +N G+E  FP+
Sbjct: 1   MNISMQHLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTESNQNAGEEHLFPV 60

Query: 60  SS-SCCRDLIFQHQRTKSCELLAQLPTSIPLD-SGIHAQTLISNQPRWLNFSSCSDSSVL 117
           SS + CRD+ + H RTK C+LL+QL T IP+D SGIHAQTL++NQP W+N+S+  D ++L
Sbjct: 61  SSVASCRDITYPHPRTKPCDLLSQLSTCIPIDNSGIHAQTLLTNQPNWVNYSNGMDPNIL 120

Query: 118 EGTVGTRALIPVPGGLLELFVTKQVSEDQQLIDFVTSQC 156
           E T+GT+ LI VPGGL+ELFVTKQVSED QLIDFVT+QC
Sbjct: 121 EETIGTQVLISVPGGLVELFVTKQVSEDHQLIDFVTNQC 159


>Glyma20g24170.1 
          Length = 538

 Score =  223 bits (569), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 134/188 (71%), Gaps = 11/188 (5%)

Query: 3   VFQSLIERLRPLVGLKGWDYCVLWIFSDDQRFLEWMECCCGGTEDIKNGGDEVQFPLSS- 61
           + Q+L+ERLRPLVGL GWDYC+ W  S+DQRFLEW+ CCC GTE  +N G+E  FP+SS 
Sbjct: 4   IMQNLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTESNQNAGEEHIFPVSSV 63

Query: 62  SCCRDLIFQHQRTKSCELLAQLPTSIPLD-SGIHAQTLISNQPRWLNFSSCSDSSVLEGT 120
           + CRD  + H RTK C+LL+QL TSIP+D SGIHAQTL++NQP W+N+S+  D ++LE T
Sbjct: 64  ASCRDSTYPHPRTKPCDLLSQLSTSIPIDNSGIHAQTLLTNQPNWVNYSNGMDPNILEET 123

Query: 121 VGTRALIPVPGGLLELFVTKQVSEDQQLIDFVTSQCSIIREQEAIINSTNMEASFAXXXX 180
           +GT+ LI VPGGL+ELFVTKQV ED QLID+V +QC         I + N   SF     
Sbjct: 124 IGTQVLISVPGGLVELFVTKQVPEDHQLIDYVINQC---------IEAVNHSMSFHIDEN 174

Query: 181 XXSEQQSS 188
             S  QS+
Sbjct: 175 SMSNMQSN 182


>Glyma08g39470.1 
          Length = 451

 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 94/164 (57%), Gaps = 18/164 (10%)

Query: 11  LRPLVGLKGWDYCVLWIFSDD-QRFLEWMECCCGGT-----EDIKNGGDEVQFPLSSSCC 64
           LRPLV    WDY V+W + DD  RF+EW+ CCC G+     + +K   ++ +    +  C
Sbjct: 2   LRPLVKTNAWDYVVVWKYGDDPTRFIEWVGCCCRGSCSVNIDVVKPEEEKGEVCNLAQSC 61

Query: 65  RD--LIFQH-QRTKSCELLAQLPTSIPLDSGIHAQTLISNQPRWLNFSSCSDSSVLEGTV 121
           RD    FQH  RTK+CE LAQLP ++ L SG+H +  IS Q RWL             ++
Sbjct: 62  RDDHFHFQHLVRTKACEALAQLPFALSLYSGVHGEVAISQQARWLTQVD---------SI 112

Query: 122 GTRALIPVPGGLLELFVTKQVSEDQQLIDFVTSQCSIIREQEAI 165
           GT+ LIP+ GGL+ELF    +  D  +I+F+T+   +  EQEAI
Sbjct: 113 GTQVLIPIVGGLIELFTENLIPMDMNIIEFITAHGCVSLEQEAI 156


>Glyma18g19110.1 
          Length = 362

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 27/170 (15%)

Query: 12  RPLVGLKGWDYCVLWIFSDD-QRFLEWMECCCGGT--EDIKNGGDEVQFPLSSSCCRD-- 66
           R LV    WDY V+W + DD  RF+EW+ CCC G+  + +K   ++ +    +  CRD  
Sbjct: 6   RTLVKTSAWDYVVVWKYGDDPTRFIEWVGCCCSGSCIDVVKPEEEKAEVCNMAPICRDDH 65

Query: 67  LIFQHQ-RTKSCELLAQLPTSIPLDSG----------IHAQTLISNQPRWLNFSSCSDSS 115
             FQH  RTK+CE LAQLP ++ L SG               L+S   R L F +  +  
Sbjct: 66  FHFQHPVRTKACEALAQLPFALSLYSGDFFFPSCSFDKGVTYLLSILARNLPFVA-RNFL 124

Query: 116 VLEGTVGTRALIPVPGGLLELFVTKQVSEDQQLIDFVTSQCSIIREQEAI 165
            LE ++GT+ L+P+ GGL+ELF            + +T+   +  EQE I
Sbjct: 125 TLE-SIGTQVLVPIFGGLIELFTE---------FELITAHGCVSSEQETI 164