Jatropha Genome Database

JcCB0293861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0293861.10 - phase: 0 /partial
         (99 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g41540.1                                                        94   4e-20
Glyma15g42900.1                                                        89   8e-19
Glyma08g16420.1                                                        84   5e-17
Glyma06g44510.1                                                        71   3e-13
Glyma12g13240.1                                                        65   1e-11
Glyma12g33280.1                                                        64   3e-11
Glyma13g27340.1                                                        64   4e-11
Glyma13g37140.1                                                        62   1e-10

>Glyma13g41540.1 
          Length = 395

 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 69/109 (63%), Gaps = 10/109 (9%)

Query: 1   MADRQQYPSITQKVAGQVHL--SSILSHDVQCRSMAFQRPTIYHRQFAYGNYCNVG---- 54
           M D+Q+YP+I QK+AGQ+HL  +S LS  V       +RP ++ ++F+  N+ N G    
Sbjct: 2   MVDKQRYPTIEQKLAGQLHLRSNSNLSPHVGTCYERLKRPALFQQRFSLKNHSNAGLLCP 61

Query: 55  ----FQATPYLSLVGSTTSPVFVNSPSEKGIAGFALDFLMGGVSAAVSK 99
               ++AT +L  V S  SPV V SPSEK  A FA DFLMGGVSAAVSK
Sbjct: 62  LVPAWKATSHLHSVASAASPVLVPSPSEKNFASFATDFLMGGVSAAVSK 110


>Glyma15g42900.1 
          Length = 389

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 67/107 (62%), Gaps = 11/107 (10%)

Query: 1   MADRQQYPSITQKVAGQVHLSSILSHDVQCRSMAFQRPTIYHRQFAYGNYCNVGFQ---- 56
           M D+ Q+P+I  KVAGQ+HL S LS  ++    A++ P +Y R  ++GNY N   Q    
Sbjct: 1   MVDQVQHPTIMDKVAGQLHLRSGLSSGIRSYDGAYRHPAMYQRP-SFGNYSNAALQFPVM 59

Query: 57  ----ATPYLSLVGSTTSPVFVNSPSEKGIAGFALDFLMGGVSAAVSK 99
               AT  LS   ++ SPVFV +P+EKG   F LDFLMGGVSAAVSK
Sbjct: 60  PTCKATMDLSATATSASPVFVAAPAEKG--HFLLDFLMGGVSAAVSK 104


>Glyma08g16420.1 
          Length = 388

 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 67/107 (62%), Gaps = 12/107 (11%)

Query: 1   MADRQQYPSITQKVAGQVHLSSILSHDVQCRSMAFQRPTIYHRQFAYGNYCNVGFQ---- 56
           M D+ Q+P+I  KVAGQ+HL S +S  ++    A+  PT+Y R  ++GNY N   Q    
Sbjct: 1   MLDQVQHPTIMDKVAGQLHLRSGVS-GIRSYEGAYCHPTMYQRP-SFGNYSNAALQYPVM 58

Query: 57  ----ATPYLSLVGSTTSPVFVNSPSEKGIAGFALDFLMGGVSAAVSK 99
               AT  LS   +T SPVFV +P+EKG   F +DFLMGGVSAAVSK
Sbjct: 59  PSCKATMDLSAAATTASPVFVAAPAEKG--HFLIDFLMGGVSAAVSK 103


>Glyma06g44510.1 
          Length = 372

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 64/99 (64%), Gaps = 13/99 (13%)

Query: 1  MADRQQYPSITQKVAGQVHLSSILSHDVQCRSMAFQRPTIYHRQFAYGNYCNVGFQATPY 60
          MAD  Q+PS+ QK+AGQ +L S LS +    + +           + G+Y N G  ++  
Sbjct: 1  MADGPQHPSVVQKLAGQSYLVSRLSPNFNSGNYS-----------STGSYFNGGLHSSG- 48

Query: 61 LSLVGSTTSPVFVNSPSEKGIAGFALDFLMGGVSAAVSK 99
          L++V S  SPV V++P+EKG++GF +DFLMGGVSAAVSK
Sbjct: 49 LAVV-SPGSPVTVHAPAEKGVSGFLVDFLMGGVSAAVSK 86


>Glyma12g13240.1 
          Length = 371

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 65/99 (65%), Gaps = 13/99 (13%)

Query: 1  MADRQQYPSITQKVAGQVHLSSILSHDVQCRSMAFQRPTIYHRQFAYGNYCNVGFQATPY 60
          MAD  Q+PS+ QK+AGQ +L S LS +   R+ +           A G+Y N G   +P 
Sbjct: 1  MADGPQHPSVVQKLAGQSYLVSRLSPNFNSRNYS-----------ATGSYVNGGMH-SPG 48

Query: 61 LSLVGSTTSPVFVNSPSEKGIAGFALDFLMGGVSAAVSK 99
          L++V S  SPV V++P+EKG++GF +DFLMGGVSAAVSK
Sbjct: 49 LAVV-SPVSPVTVHAPAEKGVSGFLVDFLMGGVSAAVSK 86


>Glyma12g33280.1 
          Length = 367

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 26/103 (25%)

Query: 1  MAD--RQQYPSITQKVAGQVHLSSILS--HDVQCRSMAFQRPTIYHRQFAYGNYCNVGFQ 56
          MAD    Q+PS+ QK++GQ +L S L+  H   C +               G+Y N G Q
Sbjct: 1  MADGLHSQHPSVVQKLSGQSYLVSRLAPNHSRNCSTT--------------GSYFNGGLQ 46

Query: 57 ATPYLSLVGSTTSPVFVNSPSEKGIAGFALDFLMGGVSAAVSK 99
          +        S   PV  ++P+EKG++GF LDFLMGGVSAAVSK
Sbjct: 47 S--------SGLVPVTAHAPAEKGVSGFLLDFLMGGVSAAVSK 81


>Glyma13g27340.1 
          Length = 369

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 56/101 (55%), Gaps = 19/101 (18%)

Query: 1  MADRQQYPSITQKVAGQVHLSSILSHDVQCRSMAFQRPTIYHRQFAYGNYCNVGFQATPY 60
          M D+ Q+P I +KVAGQ HL + L               +YH+  ++ NY N   Q  P 
Sbjct: 1  MVDQVQHPRIIEKVAGQQHLRTGLP--------------LYHQWRSFANYSNGALQ-YPV 45

Query: 61 LSLVGSTT--SPVFVNSPSEKGIAGFALDFLMGGVSAAVSK 99
          +    + T  S VFV +PSEKG   F +DFLMGGVSAAVSK
Sbjct: 46 MPACRAATAASHVFVAAPSEKG--HFLIDFLMGGVSAAVSK 84


>Glyma13g37140.1 
          Length = 367

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 22/101 (21%)

Query: 1  MAD--RQQYPSITQKVAGQVHLSSILSHDVQCRSMAFQRPTIYHRQFAYGNYCNVGFQAT 58
          MAD    ++PS+ QK++GQ +L S L+            PT        G+Y N G Q+ 
Sbjct: 1  MADGLHSRHPSVVQKLSGQSYLLSRLA------------PTHSRNYSTTGSYFNGGLQS- 47

Query: 59 PYLSLVGSTTSPVFVNSPSEKGIAGFALDFLMGGVSAAVSK 99
                 S   PV  ++P+EKG++GF LDF+MGGVSAAVSK
Sbjct: 48 -------SGLVPVMAHAPAEKGVSGFLLDFMMGGVSAAVSK 81