Jatropha Genome Database

JcCB0291291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0291291.10 + phase: 2 /TE/partial
         (56 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g18690.1                                                        58   3e-09
Glyma07g13760.1                                                        58   3e-09
Glyma03g04980.1                                                        52   1e-07
Glyma14g17420.1                                                        51   3e-07
Glyma06g36300.1                                                        48   3e-06

>Glyma06g18690.1 
          Length = 1169

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 36/52 (69%)

Query: 1    TKHIDV*YHFVRVIMEEGDILLQKIKMTKNSIDMMMKAVITVEFKHCLDLIN 52
            TKHID+  HF+R ++ +GD+L++KI    N  DM  KA+ T++FK CLD + 
Sbjct: 1115 TKHIDIRMHFIRDVVTQGDVLIEKISTLDNPADMRTKALPTIKFKQCLDSVG 1166


>Glyma07g13760.1 
          Length = 995

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 38/52 (73%)

Query: 1   TKHIDV*YHFVRVIMEEGDILLQKIKMTKNSIDMMMKAVITVEFKHCLDLIN 52
           TKHIDV  HF+R ++E   + ++K+   +NS +M  K++ +V+FKHCLDLIN
Sbjct: 940 TKHIDVKLHFIRDVIESEKVKVEKVSTEENSANMFTKSLSSVKFKHCLDLIN 991


>Glyma03g04980.1 
          Length = 1363

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 36/51 (70%)

Query: 1    TKHIDV*YHFVRVIMEEGDILLQKIKMTKNSIDMMMKAVITVEFKHCLDLI 51
            TKHID+  +F+R ++++G ++++KI    N  DM+ KA  + +F HCLDLI
Sbjct: 1308 TKHIDIKLYFIREVIDQGSVIVKKISTDHNPSDMITKAFPSSKFFHCLDLI 1358


>Glyma14g17420.1 
          Length = 1459

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 35/50 (70%)

Query: 2    KHIDV*YHFVRVIMEEGDILLQKIKMTKNSIDMMMKAVITVEFKHCLDLI 51
            KHID+  HFV+ ++ +G ++++KI    N  DM+ KA+ + +F HCLDLI
Sbjct: 1405 KHIDIKLHFVKEVIGQGSVIVKKISTDHNPSDMITKALPSSKFFHCLDLI 1454


>Glyma06g36300.1 
          Length = 1172

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 1    TKHIDV*YHFVRVIMEEGDILLQKIKMTKNSIDMMMKAVITVEFKHCLDLI 51
            TKHI++  HF R ++  G ++++KI    N  DM+ KA+ + +F HCL+LI
Sbjct: 1117 TKHINIKLHFFREVIGHGSVIVKKISTDHNPSDMITKALPSNKFFHCLNLI 1167