Jatropha Genome Database

JcCB0287701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0287701.10 - phase: 0 /partial/short
         (41 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g27960.1                                                        60   6e-10
Glyma15g11070.1                                                        60   6e-10
Glyma17g02050.1                                                        48   2e-06
Glyma07g38650.2                                                        48   3e-06
Glyma07g38650.1                                                        48   3e-06

>Glyma13g27960.1 
          Length = 274

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 31/40 (77%)

Query: 1   PITFALVYMGTTLKDLSDVTHGWNEVSTTRWVRAVLPFVL 40
           PIT ALVY+GTTLKDLSDVTHGW E S TRW   +L  V+
Sbjct: 173 PITLALVYVGTTLKDLSDVTHGWGEFSKTRWAFIILGLVI 212


>Glyma15g11070.1 
          Length = 274

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 31/40 (77%)

Query: 1   PITFALVYMGTTLKDLSDVTHGWNEVSTTRWVRAVLPFVL 40
           PIT ALVY+GTTLKDLSDVTHGW E S TRW   +L  V+
Sbjct: 173 PITLALVYVGTTLKDLSDVTHGWGEFSKTRWAFIILGLVI 212


>Glyma17g02050.1 
          Length = 275

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/30 (73%), Positives = 24/30 (80%)

Query: 1   PITFALVYMGTTLKDLSDVTHGWNEVSTTR 30
           PIT ALVY+GTT KDLSDVT GW+E S T 
Sbjct: 173 PITLALVYVGTTFKDLSDVTRGWSEFSKTH 202


>Glyma07g38650.2 
          Length = 256

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 23/29 (79%)

Query: 1   PITFALVYMGTTLKDLSDVTHGWNEVSTT 29
           PIT ALVY+GTT KDLSDVT GW E S T
Sbjct: 177 PITLALVYVGTTFKDLSDVTRGWGEFSKT 205


>Glyma07g38650.1 
          Length = 256

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 23/29 (79%)

Query: 1   PITFALVYMGTTLKDLSDVTHGWNEVSTT 29
           PIT ALVY+GTT KDLSDVT GW E S T
Sbjct: 177 PITLALVYVGTTFKDLSDVTRGWGEFSKT 205