Jatropha Genome Database

JcCB0286801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0286801.10 - phase: 0 /partial
         (218 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g11630.1                                                       102   3e-22
Glyma12g01910.1                                                       102   4e-22
Glyma11g11630.2                                                       101   7e-22
Glyma12g01910.2                                                       100   1e-21

>Glyma11g11630.1 
          Length = 376

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 113/225 (50%), Gaps = 41/225 (18%)

Query: 1   VERERNLLNSKLIEFENLIRNPYVAPAKSALS----QSPFAGVTPPAIATSDQNNAPPLV 56
           VE+ERN+LNSKL+EF+ L+  PY  P  S+L     QS  A       +TS Q+N P  V
Sbjct: 185 VEKERNILNSKLVEFQKLLSEPYQIPISSSLGSPTPQSIVANANANPFSTS-QSNGPLSV 243

Query: 57  SSFSQLGPSLNVESGTRPSSSSNNAFGQPNILSNSSQTSGSFGISNFAPANSGSISSQLP 116
           SSFSQL   LN+    RPS+   N   +P          G FG                 
Sbjct: 244 SSFSQLSTPLNM-GFERPSAPLTNTLTKP----------GFFG----------------- 275

Query: 117 NQASGNPFSSNVAGFSNSSAIIN-QSNPFDSSAVTKQVTNSSTAQHVIISNSPNLASNAV 175
             + GN  +SN A   NSSA+   QS P+ S+ V   +   ST Q +   N  N     +
Sbjct: 276 --SGGNSLASNNAANLNSSAVFGVQSGPY-STPVDLNMFPGSTQQTLTAFN--NSDPTTM 330

Query: 176 GQATEHIHSTN--GMQKGAVDASIWLKESWNPGEIPEEAPPDQYI 218
            Q T  +  +N   ++K +VD SIWLKE WNPGEIPEEAPPD ++
Sbjct: 331 FQTTPDVQLSNMSQVEKVSVDPSIWLKEKWNPGEIPEEAPPDTFV 375


>Glyma12g01910.1 
          Length = 206

 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 112/222 (50%), Gaps = 38/222 (17%)

Query: 1   VERERNLLNSKLIEFENLIRNPYVAPAKSAL-SQSPFA-GVTPPAIATSDQNNAPPLVSS 58
           VE+ERN+L SKL+EF+ L+  PY  P  S+L SQ+P + G      +TS Q+N P  VSS
Sbjct: 18  VEKERNILKSKLVEFDKLLSEPYKIPISSSLGSQTPQSIGANANPFSTS-QSNGPLSVSS 76

Query: 59  FSQLGPSLNVESGTRPSSSSNNAFGQPNILSNSSQTSGSFGISNFAPANSGSISSQLPNQ 118
           FSQL   LN+    RPS+           L+N+    G FG                   
Sbjct: 77  FSQLSTPLNM-GFERPSAP----------LTNTPTKPGFFG------------------- 106

Query: 119 ASGNPFSSNVAGFSNSSAIINQSNPFDSSAVTKQVTNSSTAQHVIISNSPNLASNAVGQA 178
           + GN  +SN A  +++     QS P+ +    K    S+       SNS      ++ Q 
Sbjct: 107 SGGNSLASNTANLNSNGVFGVQSGPYSTPLDLKMFPGSTQETSTAFSNS---GPTSMFQT 163

Query: 179 TEHIH--STNGMQKGAVDASIWLKESWNPGEIPEEAPPDQYI 218
           T  +   S + ++K +VD SIWLKE WNPGEIPEEAPPD ++
Sbjct: 164 TPDVQLLSQSQVEKVSVDPSIWLKEKWNPGEIPEEAPPDTFV 205


>Glyma11g11630.2 
          Length = 375

 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 113/224 (50%), Gaps = 40/224 (17%)

Query: 1   VERERNLLNSKLIEFENLIRNPYVAPAKSALS----QSPFAGVTPPAIATSDQNNAPPLV 56
           VE+ERN+LNSKL+EF+ L+  PY  P  S+L     QS  A       +TS Q+N P  V
Sbjct: 185 VEKERNILNSKLVEFQKLLSEPYQIPISSSLGSPTPQSIVANANANPFSTS-QSNGPLSV 243

Query: 57  SSFSQLGPSLNVESGTRPSSSSNNAFGQPNILSNSSQTSGSFGISNFAPANSGSISSQLP 116
           SSFSQL   LN+    RPS+   N   +P          G FG                 
Sbjct: 244 SSFSQLSTPLNM-GFERPSAPLTNTLTKP----------GFFG----------------- 275

Query: 117 NQASGNPFSSNVAGFSNSSAIIN-QSNPFDSSAVTKQVTNSSTAQHVIISNSPNLASNAV 175
             + GN  +SN A   NSSA+   QS P+ S+ V   +   ST Q +   N  N     +
Sbjct: 276 --SGGNSLASNNAANLNSSAVFGVQSGPY-STPVDLNMFPGSTQQTLTAFN--NSDPTTM 330

Query: 176 GQATEHIH-STNGMQKGAVDASIWLKESWNPGEIPEEAPPDQYI 218
            Q T  +  + + ++K +VD SIWLKE WNPGEIPEEAPPD ++
Sbjct: 331 FQTTPDVQLNMSQVEKVSVDPSIWLKEKWNPGEIPEEAPPDTFV 374


>Glyma12g01910.2 
          Length = 205

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 110/221 (49%), Gaps = 37/221 (16%)

Query: 1   VERERNLLNSKLIEFENLIRNPYVAPAKSAL-SQSPFA-GVTPPAIATSDQNNAPPLVSS 58
           VE+ERN+L SKL+EF+ L+  PY  P  S+L SQ+P + G      +TS Q+N P  VSS
Sbjct: 18  VEKERNILKSKLVEFDKLLSEPYKIPISSSLGSQTPQSIGANANPFSTS-QSNGPLSVSS 76

Query: 59  FSQLGPSLNVESGTRPSSSSNNAFGQPNILSNSSQTSGSFGISNFAPANSGSISSQLPNQ 118
           FSQL   LN+    RPS+           L+N+    G FG                   
Sbjct: 77  FSQLSTPLNM-GFERPSAP----------LTNTPTKPGFFG------------------- 106

Query: 119 ASGNPFSSNVAGFSNSSAIINQSNPFDSSAVTKQVTNSSTAQHVIISNSPNLASNAVGQA 178
           + GN  +SN A  +++     QS P+ +    K    S+       SNS      ++ Q 
Sbjct: 107 SGGNSLASNTANLNSNGVFGVQSGPYSTPLDLKMFPGSTQETSTAFSNS---GPTSMFQT 163

Query: 179 TEHIHSTNG-MQKGAVDASIWLKESWNPGEIPEEAPPDQYI 218
           T  +      ++K +VD SIWLKE WNPGEIPEEAPPD ++
Sbjct: 164 TPDVQLFQSQVEKVSVDPSIWLKEKWNPGEIPEEAPPDTFV 204