Jatropha Genome Database

JcCB0285631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0285631.20 - phase: 1 /pseudo/partial
         (90 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g35670.1                                                        74   5e-14
Glyma03g32960.1                                                        72   2e-13

>Glyma19g35670.1 
          Length = 139

 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 40/49 (81%)

Query: 42  RENMNAKYLDGWVIFVDPAKPREQRPPPSPVQEPTDTGYRTNKTIGWCG 90
           RE MNAK+LDGWVIFVDPAKPRE RPP     +P++TG+  NKT+GWCG
Sbjct: 91  REGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSETGFTVNKTVGWCG 139


>Glyma03g32960.1 
          Length = 139

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 39/49 (79%)

Query: 42  RENMNAKYLDGWVIFVDPAKPREQRPPPSPVQEPTDTGYRTNKTIGWCG 90
           RE MNAK+LDGWVIFVDPAKPRE RPP     +P++ G+  NKT+GWCG
Sbjct: 91  REGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSEIGFTVNKTVGWCG 139