Jatropha Genome Database

JcCB0285121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0285121.10 + phase: 1 /pseudo/partial
         (241 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g06150.1                                                       400   e-112
Glyma11g14170.1                                                       365   e-101
Glyma11g30440.1                                                       162   4e-40
Glyma07g40160.1                                                       105   3e-23
Glyma17g00640.1                                                        87   1e-17
Glyma04g11560.1                                                        84   9e-17
Glyma06g11130.1                                                        82   5e-16
Glyma16g24870.1                                                        49   4e-06

>Glyma12g06150.1 
          Length = 632

 Score =  400 bits (1027), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/223 (86%), Positives = 210/223 (94%)

Query: 19  EENYIPAIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLID 78
           EE+Y+PAI+IVGRPNVGKSSILNAL+ EDRTIVSPISGTTRDAIDTEF+GPDGQKF+LID
Sbjct: 332 EEDYVPAISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFQLID 391

Query: 79  TAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKEG 138
           TAGIR+R A+AS+GS TEALSVNRAFRAIRRSDVVALVIEAMACITEQDY+IAERIEKEG
Sbjct: 392 TAGIRKRTAIASAGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYKIAERIEKEG 451

Query: 139 KGCLIVVNKWDTIPNKNQQTAMYYEQDVREKLRTLHWAPVVYSTAIAGRSVEKIIDAASA 198
           KGC+IVVNKWDTIPNKNQQTA YYEQDVREKLR+L WAP+VYSTA+AG SV+KII AA  
Sbjct: 452 KGCVIVVNKWDTIPNKNQQTASYYEQDVREKLRSLVWAPIVYSTAVAGHSVDKIIVAAIE 511

Query: 199 VEKERSRRLSTAILNQVVGEALAFKSPPRTRGGKRGRIYYCTQ 241
           VEKERSRRL T+ILNQVV EA+ FK PPRTRGGKRGR+YYCTQ
Sbjct: 512 VEKERSRRLGTSILNQVVQEAVGFKPPPRTRGGKRGRVYYCTQ 554



 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 59/253 (23%)

Query: 20  ENYIPAIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAI-DTEFSGPDGQKFRLID 78
           +N +P +AIVGRPNVGKS++ N L+  +R IV    G TRD +    + G    +F ++D
Sbjct: 126 DNLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGE--HEFMVVD 183

Query: 79  TAGI----RRRAAVASSGSVTEALSVN--------------------RAFRAIRRSDVVA 114
           T G+    + +A V    ++T  + ++                    +A  A+  S V+ 
Sbjct: 184 TGGVITVSKSQATVMEELAITTTIGMDGIPLAVREAAVARMPSMIERQATAAVEESSVII 243

Query: 115 LVIEAMACITEQDYRIAERIEKE--GKGCLIVVNKWDTIPNKNQQTAMYYEQDVREKLRT 172
            +++  A +T  D  IA+ + K    K  ++ VNK ++   +  Q + ++         +
Sbjct: 244 FLVDGQAGLTAADEEIADWLRKNYSDKYVILAVNKCESPRKRIMQASEFW---------S 294

Query: 173 LHWAPVVYSTAIAGRSVEKIID-AASAVEK-ERSRRL------------------STAIL 212
           L + P+  S AI+G    +++D   S ++K E S  L                   ++IL
Sbjct: 295 LGFEPLPIS-AISGTGTGELLDLVCSGLQKIEESNNLVEEDYVPAISIVGRPNVGKSSIL 353

Query: 213 NQVVGEALAFKSP 225
           N +VGE     SP
Sbjct: 354 NALVGEDRTIVSP 366


>Glyma11g14170.1 
          Length = 430

 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/227 (79%), Positives = 199/227 (87%), Gaps = 10/227 (4%)

Query: 15  NLGEEENYIPAIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKF 74
           NL EEE+Y+PAI+IVGRPNVGKSSILNAL+ EDRTIVSPIS TTRDAIDTEF+GPDGQKF
Sbjct: 176 NLVEEEDYVPAISIVGRPNVGKSSILNALVGEDRTIVSPISCTTRDAIDTEFTGPDGQKF 235

Query: 75  RLIDTAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERI 134
           +LIDTAGIR+R+A+AS+G+          F AIRRSDVVALVIEAMACITEQ+Y IAERI
Sbjct: 236 QLIDTAGIRKRSAIASAGT----------FCAIRRSDVVALVIEAMACITEQEYNIAERI 285

Query: 135 EKEGKGCLIVVNKWDTIPNKNQQTAMYYEQDVREKLRTLHWAPVVYSTAIAGRSVEKIID 194
           EKEGKGC+IVVNKWDTIPNKNQQTA YYEQDVREKLR+L WAP+VYST +AG SV KII 
Sbjct: 286 EKEGKGCVIVVNKWDTIPNKNQQTASYYEQDVREKLRSLDWAPIVYSTVVAGHSVGKIIV 345

Query: 195 AASAVEKERSRRLSTAILNQVVGEALAFKSPPRTRGGKRGRIYYCTQ 241
           AAS VEKERSRRL T+ LNQVV EA+ FK PPRTRGGK GR+YYCTQ
Sbjct: 346 AASEVEKERSRRLGTSTLNQVVQEAVGFKPPPRTRGGKGGRVYYCTQ 392


>Glyma11g30440.1 
          Length = 227

 Score =  162 bits (409), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/105 (76%), Positives = 92/105 (87%)

Query: 19  EENYIPAIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLID 78
           EE+Y+ AI+IVGRPNV KS+ILNAL+ EDRTI SPISGTTRDAIDTEF+GPDGQKF+LID
Sbjct: 89  EEDYVLAISIVGRPNVAKSTILNALVGEDRTIGSPISGTTRDAIDTEFTGPDGQKFQLID 148

Query: 79  TAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACI 123
           TAGI++   +AS+G  TEALSVNRAFRAI R DVV LVIEAMA +
Sbjct: 149 TAGIKKITTIASAGITTEALSVNRAFRAICRFDVVVLVIEAMALL 193


>Glyma07g40160.1 
          Length = 545

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 125/214 (58%), Gaps = 20/214 (9%)

Query: 15  NLGEEENYIP-AIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQK 73
           +L  +++ +P  +AIVGRPNVGKS++LNALL+EDR +V P +G TRD+I T+F    G+ 
Sbjct: 238 DLDVDKSKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSIRTQFEF-QGRT 296

Query: 74  FRLIDTAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACIT------EQD 127
             L+DTAG  +R       +   +LS+ ++ +++ R+ ++ALV++A   I         +
Sbjct: 297 IYLVDTAGWLQRTKQEKGAA---SLSIMQSRKSLLRAHIIALVLDAEEIINARRSMKHAE 353

Query: 128 YRIAERIEKEGKGCLIVVNKWDTIPNKNQQTAMYYE-------QDVREKLRTLHWAPVVY 180
             IA R  +EG+G +++VNK D +  K++ ++  YE       Q+++  +  +   PVV+
Sbjct: 354 VVIARRAVEEGRGLVVIVNKMDLLRGKHKSSS--YEKVMEVVPQEIQTIIPQVTGIPVVF 411

Query: 181 STAIAGRSVEKIIDAASAVEKERSRRLSTAILNQ 214
            +A+ GR    +++      ++   RL TA LN+
Sbjct: 412 ISALEGRGRTTVLNQVIDTYEKWCSRLPTARLNR 445



 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 9/133 (6%)

Query: 23  IPAIAIVGRPNVGKSSILNALLREDRTIV--SPISGTTRDAIDTEFSGPDGQKFRLIDTA 80
           +P + I+GRPNVGKS++ N L+R    +V  +P    TRD I    +     +FR++D+A
Sbjct: 41  LPTVVILGRPNVGKSALFNRLIRRREALVYNTPDDHVTRD-IREGLAKLADLRFRVLDSA 99

Query: 81  GIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKEGKG 140
           G+   A  AS    T +++ +     + +S     + +A A +   D ++ + + K    
Sbjct: 100 GLEAEATSASILHRTASITAH----VLAKSHFALFLTDARAGLHPLDLQVGKWLRKHAPQ 155

Query: 141 C--LIVVNKWDTI 151
              ++ +NK +++
Sbjct: 156 IKPIVAMNKSESL 168


>Glyma17g00640.1 
          Length = 308

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 106/186 (56%), Gaps = 24/186 (12%)

Query: 15  NLGEEENYIP-AIAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQK 73
           +L  +++ +P  +AI+GRPNVGKS++LNALL+ED  +V P +G TRD+I T+F    G+ 
Sbjct: 16  DLDVDKSKLPLQLAILGRPNVGKSTLLNALLQEDHVLVGPEAGLTRDSIRTQFEF-QGRT 74

Query: 74  FRLIDTAGIRRRAAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACIT------EQD 127
             L+DTAG  +  +            + ++ +++ ++ ++ALV++A   I         +
Sbjct: 75  IYLVDTAGWLQMQSTP---------GIMQSRKSLLQAHIIALVLDAEEIINARRSMKHAE 125

Query: 128 YRIAERIEKEGKGCLIVVNKWDTIPNKNQQTAMYYE------QDVREKLRTLHWAPVVYS 181
             IA    +EG+G +++VNK + +P    Q++ Y +      Q+++  +  +   PVV+ 
Sbjct: 126 VIIARWAVEEGRGLVVIVNKMN-LPRGKHQSSSYEKVMEIVPQEIQTIIPQVKGIPVVFI 184

Query: 182 TAIAGR 187
           +A+ GR
Sbjct: 185 SALEGR 190


>Glyma04g11560.1 
          Length = 587

 Score = 84.3 bits (207), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 23/174 (13%)

Query: 26  IAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRR 85
           IAIVGRPNVGKSS+LNA  + +R IV+ I+GTTRD I+   S   G    L+DTAGIR  
Sbjct: 342 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASIS-VSGIPITLLDTAGIR-- 398

Query: 86  AAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKEGKG----- 140
                +  + E + V R+    R +D++ + + A+   T +D ++ ERI+   KG     
Sbjct: 399 ----DTDDIVEKIGVERSEAVARGADLIIMTMSAVEGWTSEDTKLLERIQST-KGSTGSS 453

Query: 141 --CLIVVNKWDTIPNKNQQTAMYYEQDVREKLRTLHWAPVVYSTAIAGRSVEKI 192
              ++VVNK D  P    +    +++  +  + + H    V++ A+ G+ +  +
Sbjct: 454 TPVILVVNKIDCKPCAETE----WDKGCQNHIFSKH----VFTCAVTGQGLHDL 499


>Glyma06g11130.1 
          Length = 398

 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 15/134 (11%)

Query: 26  IAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRR 85
           IAIVGRPNVGKSS+LNA  + +R IV+ I+GTTRD I+   S   G    L+DTAGIR  
Sbjct: 153 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASIS-VSGIPITLLDTAGIR-- 209

Query: 86  AAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEKEGKG----- 140
                +  + E + V R+    R +D++ + + A+   T +D ++ ERI+   KG     
Sbjct: 210 ----DTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQST-KGSTGSS 264

Query: 141 --CLIVVNKWDTIP 152
              ++VVNK D  P
Sbjct: 265 TPVILVVNKIDCKP 278


>Glyma16g24870.1 
          Length = 428

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 9/142 (6%)

Query: 26  IAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRR 85
           +A++G+PNVGKS++ N +L +  +IV+    TTR  I    SG D Q   L DT G+ ++
Sbjct: 133 VALLGKPNVGKSTLANQMLGQKLSIVTDKPQTTRHRILCICSGTDYQMI-LYDTPGVLQK 191

Query: 86  AAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIE--KEGKGCLI 143
                   + +++ +     A   +D V ++++A     + D  + E I   K+    L+
Sbjct: 192 EM-----HLLDSMMMKNVRSAAVNADCVLVLVDARKTPEKIDGLLEEGIGDLKDKPPTLL 246

Query: 144 VVNKWDTI-PNKNQQTAMYYEQ 164
           ++NK D + P +  +   +YE+
Sbjct: 247 ILNKKDLVKPGELAKKLEWYEK 268