Jatropha Genome Database

JcCB0284451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284451.10 + phase: 2 /pseudo/partial
         (149 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g13660.1                                                        62   3e-10
Glyma09g10300.1                                                        59   1e-09
Glyma09g21070.1                                                        57   5e-09
Glyma05g30510.1                                                        54   5e-08
Glyma08g13640.1                                                        54   6e-08
Glyma10g42440.1                                                        51   6e-07
Glyma09g05540.1                                                        50   1e-06
Glyma09g05580.1                                                        50   1e-06
Glyma20g24620.1                                                        49   2e-06

>Glyma08g13660.1 
          Length = 742

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 32/48 (66%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P  SI +NIFLLGSID  S+ RFG+WT          GLHA+YDAA
Sbjct: 520 WLPALSIFINIFLLGSIDVASYIRFGVWTAFLLVYYAFVGLHASYDAA 567


>Glyma09g10300.1 
          Length = 567

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 30/48 (62%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           WIP  SI +NIFLLGSID  SF RFG WT          GLHA+YD A
Sbjct: 518 WIPSISIFINIFLLGSIDKDSFIRFGFWTVFLLVYYVFFGLHASYDTA 565


>Glyma09g21070.1 
          Length = 577

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 32/48 (66%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           ++P ASI +NIFLLGS+D  SF RFG+WT          GLHA+YD A
Sbjct: 494 FLPSASIGINIFLLGSLDKASFRRFGVWTAILLVYYLFVGLHASYDMA 541


>Glyma05g30510.1 
          Length = 600

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 30/48 (62%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+   SI +NIFLLGSID  S+ RFG+WT          GLHA+YD A
Sbjct: 520 WLLALSIFINIFLLGSIDLDSYIRFGVWTLLLLLYYALVGLHASYDTA 567


>Glyma08g13640.1 
          Length = 602

 Score = 53.9 bits (128), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 31/48 (64%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P  SI +NIFLLGSID  SF RFG+WT          GLHA+YD A
Sbjct: 520 WLPSLSIAINIFLLGSIDKDSFIRFGVWTGFLLVYYVLLGLHASYDTA 567


>Glyma10g42440.1 
          Length = 501

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           WIP  SI LN+FLLGS+D  S+ RFG ++           +HA++DAA
Sbjct: 426 WIPSISIFLNVFLLGSLDGPSYVRFGFFSAVAVLFYVFYSVHASFDAA 473


>Glyma09g05540.1 
          Length = 589

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P  SI  N+FL+GS++ ++F RFG+ T          GLHATYD A
Sbjct: 521 WLPSLSIATNVFLMGSLEYEAFIRFGVCTVVMLIYYLLFGLHATYDMA 568


>Glyma09g05580.1 
          Length = 585

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 29/48 (60%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P  SI  N+FL+GS++  +F RFG+ T          GLHATYD A
Sbjct: 521 WVPSLSIATNVFLMGSLEYDAFIRFGVCTVVMLIYYFFFGLHATYDMA 568


>Glyma20g24620.1 
          Length = 587

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDA 120
           WIP  SI LN+FLLGS+D  S+ RFG ++           +HA++DA
Sbjct: 513 WIPSISIFLNVFLLGSLDGPSYVRFGFFSAVAVLFYVFYSVHASFDA 559