Jatropha Genome Database

JcCB0283351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0283351.10 + phase: 1 /pseudo/partial/short
         (49 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g05570.1                                                        63   7e-11
Glyma02g11980.1                                                        62   1e-10
Glyma01g05750.1                                                        60   4e-10
Glyma02g25530.1                                                        59   8e-10
Glyma16g04790.1                                                        49   1e-06
Glyma02g07690.1                                                        49   1e-06
Glyma16g04790.2                                                        49   1e-06

>Glyma20g05570.1 
          Length = 263

 Score = 63.2 bits (152), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 34/42 (80%)

Query: 2   EKGVYTWVAVNYALGTLGGDPRETTGIVELGGTSLQTARNGI 43
           E+G+ +WVAVNYALG LG +P+ETTGIVELGG SLQ    GI
Sbjct: 181 EQGISSWVAVNYALGNLGREPQETTGIVELGGASLQKITPGI 222


>Glyma02g11980.1 
          Length = 537

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/36 (72%), Positives = 30/36 (83%)

Query: 2   EKGVYTWVAVNYALGTLGGDPRETTGIVELGGTSLQ 37
           ++G+Y WV  NYALGTLGGDP ETTGI+ELGG S Q
Sbjct: 198 DEGMYAWVVANYALGTLGGDPLETTGIIELGGASAQ 233


>Glyma01g05750.1 
          Length = 539

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/36 (72%), Positives = 29/36 (80%)

Query: 2   EKGVYTWVAVNYALGTLGGDPRETTGIVELGGTSLQ 37
           ++GVY WV  NYAL TLGGDP ETTGI+ELGG S Q
Sbjct: 199 DEGVYAWVVANYALDTLGGDPLETTGIIELGGASAQ 234


>Glyma02g25530.1 
          Length = 358

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 2  EKGVYTWVAVNYALGTLGGDPRETTGIVELGGTSLQ 37
          E+G+ +WVAVNYALG LG + +ETTGIVELGG SLQ
Sbjct: 18 EQGISSWVAVNYALGNLGREAQETTGIVELGGASLQ 53


>Glyma16g04790.1 
          Length = 469

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query: 2   EKGVYTWVAVNYALGTLGGDPRETTGIVELGGTSLQTA 39
           ++G Y WV +NY LG LG D  +T G+V+LGG S+Q A
Sbjct: 191 QEGAYQWVTINYLLGNLGKDYSKTVGVVDLGGGSVQMA 228


>Glyma02g07690.1 
          Length = 472

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query: 2   EKGVYTWVAVNYALGTLGGDPRETTGIVELGGTSLQTA 39
           ++G + WV +NY LG LG D  ET G+V+LGG S+Q A
Sbjct: 194 QEGAFQWVTINYLLGKLGKDFSETVGVVDLGGGSVQMA 231


>Glyma16g04790.2 
          Length = 346

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query: 2   EKGVYTWVAVNYALGTLGGDPRETTGIVELGGTSLQTA 39
           ++G Y WV +NY LG LG D  +T G+V+LGG S+Q A
Sbjct: 191 QEGAYQWVTINYLLGNLGKDYSKTVGVVDLGGGSVQMA 228