Jatropha Genome Database

JcCB0281811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0281811.10 - phase: 0 /partial
         (287 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g31200.2                                                       321   5e-88
Glyma13g31200.1                                                       321   6e-88
Glyma15g08150.1                                                       306   2e-83

>Glyma13g31200.2 
          Length = 439

 Score =  321 bits (823), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 174/287 (60%), Positives = 191/287 (66%), Gaps = 16/287 (5%)

Query: 1   MVGGFEVGAVPFNPDGWGPPDAXXXXXXXXLPLHVPFAPFSRSEKLGRIADWTXXXXXXX 60
           M   F++GAVPFN +GWGPPD+        LPL+VPFAPFSRS+KLGRIADWT       
Sbjct: 1   MGKAFDIGAVPFNAEGWGPPDSTITGSNINLPLNVPFAPFSRSDKLGRIADWTRNFNNPT 60

Query: 61  XXXXXXXXXXSDSVFDFTXXXXXXXXXXXXXXXSTFRLVDXXXXXXXXXXXXXXXNQHRP 120
                     +D+V                    TF LVD                Q R 
Sbjct: 61  RSKNP-----ADAV----------FDFTNDDDDDTFHLVDPKPPPRPKFGPKWRFPQQR- 104

Query: 121 QLPQXXXXXXXXXXXXXXXXXXXXXXLYNLNRSNQNQPRREAAAFKSSVDIQPEWNMLDQ 180
           QLPQ                      LY++NRSN NQ RREAA FKSSVDIQPEWNM DQ
Sbjct: 105 QLPQRRDEEVEAKKREQEKERARRDRLYHMNRSNPNQQRREAAVFKSSVDIQPEWNMHDQ 164

Query: 181 IPFSTFSKLSFSVAEPEDLLLCGGLEFYDRSYDRVTPKNERRLERFKNRNFFKVTTTDDP 240
           IPFSTFSKLSF+V EPEDLLLCG LE+YDR+YDR+TPKNERRLERFKNRNFFKVTTTDDP
Sbjct: 165 IPFSTFSKLSFTVPEPEDLLLCGALEYYDRTYDRITPKNERRLERFKNRNFFKVTTTDDP 224

Query: 241 VIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVIQRVGNKLFFD 287
           +IRRLANEDKATVFATDTIL+TLMCAPRSVYSWDIV+QRVGNKLFFD
Sbjct: 225 IIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFD 271


>Glyma13g31200.1 
          Length = 557

 Score =  321 bits (822), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 174/287 (60%), Positives = 191/287 (66%), Gaps = 16/287 (5%)

Query: 1   MVGGFEVGAVPFNPDGWGPPDAXXXXXXXXLPLHVPFAPFSRSEKLGRIADWTXXXXXXX 60
           M   F++GAVPFN +GWGPPD+        LPL+VPFAPFSRS+KLGRIADWT       
Sbjct: 1   MGKAFDIGAVPFNAEGWGPPDSTITGSNINLPLNVPFAPFSRSDKLGRIADWTRNFNNPT 60

Query: 61  XXXXXXXXXXSDSVFDFTXXXXXXXXXXXXXXXSTFRLVDXXXXXXXXXXXXXXXNQHRP 120
                     +D+V                    TF LVD                Q R 
Sbjct: 61  RSKNP-----ADAV----------FDFTNDDDDDTFHLVDPKPPPRPKFGPKWRFPQQR- 104

Query: 121 QLPQXXXXXXXXXXXXXXXXXXXXXXLYNLNRSNQNQPRREAAAFKSSVDIQPEWNMLDQ 180
           QLPQ                      LY++NRSN NQ RREAA FKSSVDIQPEWNM DQ
Sbjct: 105 QLPQRRDEEVEAKKREQEKERARRDRLYHMNRSNPNQQRREAAVFKSSVDIQPEWNMHDQ 164

Query: 181 IPFSTFSKLSFSVAEPEDLLLCGGLEFYDRSYDRVTPKNERRLERFKNRNFFKVTTTDDP 240
           IPFSTFSKLSF+V EPEDLLLCG LE+YDR+YDR+TPKNERRLERFKNRNFFKVTTTDDP
Sbjct: 165 IPFSTFSKLSFTVPEPEDLLLCGALEYYDRTYDRITPKNERRLERFKNRNFFKVTTTDDP 224

Query: 241 VIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVIQRVGNKLFFD 287
           +IRRLANEDKATVFATDTIL+TLMCAPRSVYSWDIV+QRVGNKLFFD
Sbjct: 225 IIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFD 271


>Glyma15g08150.1 
          Length = 565

 Score =  306 bits (784), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 177/288 (61%), Positives = 193/288 (67%), Gaps = 10/288 (3%)

Query: 1   MVGGFEVGAVPFNPDGWGPPD-AXXXXXXXXLPLHVPFAPFSRSEKLGRIADWTXXXXXX 59
           M   F++GAVPFN DGWGPPD A        LPL+VPFAPFSRS+KLGRIADWT      
Sbjct: 1   MGKAFDIGAVPFNADGWGPPDNATSGSNNNNLPLNVPFAPFSRSDKLGRIADWTRNFNNP 60

Query: 60  XXXXXXXXXXXSDSVFDFTXXXXXXXXXXXXXXXSTFRLVDXXXXXXXXXXXXXXXNQHR 119
                      +D+VFDF                ++FRLVD                Q R
Sbjct: 61  TRSKNP-----ADAVFDFANDDSFPASADDD---ASFRLVDGKPPPRPKFGPKWRFQQQR 112

Query: 120 PQLPQXXXXXXXXXXXXXXXXXXXXXXLYNLNRSNQNQPRREAAAFKSSVDIQPEWNMLD 179
               Q                      LY++NRSN NQ RREAA FKSSVDIQPEWNM D
Sbjct: 113 QLP-QRRDEEVEAKKREQEKERARRDRLYHMNRSNPNQQRREAAVFKSSVDIQPEWNMHD 171

Query: 180 QIPFSTFSKLSFSVAEPEDLLLCGGLEFYDRSYDRVTPKNERRLERFKNRNFFKVTTTDD 239
           QIPFSTFSKLSF+V EPEDLLLCG LE+YDR+YDR+TPKNERRLERFKNRNFFKVTTTDD
Sbjct: 172 QIPFSTFSKLSFTVPEPEDLLLCGALEYYDRTYDRITPKNERRLERFKNRNFFKVTTTDD 231

Query: 240 PVIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVIQRVGNKLFFD 287
           PVIRRLANEDKATVFATDTIL+TLMCAPRSVYSWDIV+QRVGNKLFFD
Sbjct: 232 PVIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFD 279